Variant report

Variant	rs35322474
Chromosome Location	chr7:69301510-69301511
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:69299871..69301881-chr7:69303058..69304848,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1008379	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10085775	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10237145	0.82[ASN][1000 genomes]
rs10241485	0.82[ASN][1000 genomes]
rs11765886	0.80[ASN][1000 genomes]
rs12698812	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12698814	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12698815	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12698820	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12698826	0.88[AMR][1000 genomes]
rs13228464	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13232095	0.89[ASN][1000 genomes]
rs13236841	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17353815	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17365011	0.82[ASN][1000 genomes]
rs17458097	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2058395	0.82[ASN][1000 genomes]
rs210598	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs210600	0.82[ASN][1000 genomes]
rs210603	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2159679	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2903097	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34249708	0.98[AFR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4717521	0.82[ASN][1000 genomes]
rs521259	0.82[ASN][1000 genomes]
rs60739014	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs608796	0.86[ASN][1000 genomes]
rs622767	0.86[ASN][1000 genomes]
rs6955815	0.82[ASN][1000 genomes]
rs6959766	0.86[ASN][1000 genomes]
rs6963101	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6974004	0.82[ASN][1000 genomes]
rs763759	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7781403	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7793984	0.82[ASN][1000 genomes]
rs7796592	0.81[ASN][1000 genomes]
rs7808773	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9638575	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv532781	chr7:69297250-69330796	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv538919	chr7:69298265-69311376	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69288200-69304800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:69288600-69304800	Weak transcription	Ovary	ovary
3	chr7:69290400-69302400	Weak transcription	Fetal Stomach	stomach
4	chr7:69293200-69302000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:69293600-69304400	Weak transcription	Primary B cells from cord blood	blood
6	chr7:69293600-69310800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr7:69296200-69302200	Weak transcription	Brain Germinal Matrix	brain
8	chr7:69296400-69302400	Weak transcription	Brain Substantia Nigra	brain
9	chr7:69296400-69304600	Weak transcription	Brain Anterior Caudate	brain
10	chr7:69296600-69304800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:69297400-69302400	Weak transcription	Brain Hippocampus Middle	brain
12	chr7:69297600-69302000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr7:69297600-69302000	Weak transcription	NH-A	brain
14	chr7:69299000-69302200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr7:69299000-69306800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr7:69299000-69306800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr7:69299400-69303600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr7:69299600-69301600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr7:69299600-69305400	Weak transcription	Fetal Lung	lung
20	chr7:69299800-69301600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr7:69299800-69301800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr7:69299800-69302000	Weak transcription	Fetal Brain Female	brain
23	chr7:69299800-69302200	Weak transcription	Fetal Brain Male	brain
24	chr7:69299800-69302400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr7:69299800-69303600	Weak transcription	Fetal Intestine Small	intestine
26	chr7:69300000-69301600	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr7:69300000-69301800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr7:69300200-69306600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr7:69300400-69302000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr7:69300600-69304000	Weak transcription	Primary B cells from peripheral blood	blood
31	chr7:69300800-69301800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr7:69300800-69306400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr7:69301000-69302200	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr7:69301400-69302800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr7:69301400-69306800	Enhancers	HUES64 Cell Line	embryonic stem cell

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