Variant report

Variant	rs13232095
Chromosome Location	chr7:69257350-69257351
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1008379	0.91[ASN][1000 genomes]
rs10085775	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1014382	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10237145	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10241485	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11765886	0.84[ASN][1000 genomes]
rs12333508	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12698815	0.82[ASN][1000 genomes]
rs13228464	0.89[ASN][1000 genomes]
rs13236841	0.84[ASN][1000 genomes]
rs1468588	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17353815	0.92[ASN][1000 genomes]
rs17458097	0.83[ASN][1000 genomes]
rs2058395	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs210591	0.80[EUR][1000 genomes]
rs210593	0.80[EUR][1000 genomes]
rs210598	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs210600	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs210603	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2159679	0.91[ASN][1000 genomes]
rs2533432	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2533434	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2533440	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2533446	0.86[AMR][1000 genomes]
rs2533447	0.81[AMR][1000 genomes]
rs2851485	0.81[AMR][1000 genomes]
rs2851488	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2851500	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2851504	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2851509	0.81[AMR][1000 genomes]
rs2851512	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2851517	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2903097	0.90[ASN][1000 genomes]
rs34249708	0.90[ASN][1000 genomes]
rs35322474	0.89[ASN][1000 genomes]
rs4717521	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs521259	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs563740	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs588004	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60739014	0.88[ASN][1000 genomes]
rs608796	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs611052	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs611573	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs622767	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs624626	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs674865	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6955815	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6957302	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6959766	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6963101	0.90[ASN][1000 genomes]
rs6974004	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs720056	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs763759	0.83[ASN][1000 genomes]
rs7781403	0.88[ASN][1000 genomes]
rs7793984	0.86[ASN][1000 genomes]
rs7808773	0.91[ASN][1000 genomes]
rs917616	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9638575	0.82[ASN][1000 genomes]
rs981291	0.86[AMR][1000 genomes]
rs988282	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69247000-69264400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:69247200-69262200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:69249600-69258800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr7:69249800-69269600	Weak transcription	Brain Angular Gyrus	brain
5	chr7:69250200-69261200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:69252400-69260400	Weak transcription	GM12878-XiMat	blood
7	chr7:69252800-69257800	Enhancers	Brain Hippocampus Middle	brain
8	chr7:69253400-69278800	Weak transcription	Fetal Stomach	stomach
9	chr7:69253600-69264600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr7:69253800-69258800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:69253800-69258800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr7:69254200-69259200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:69254400-69265600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr7:69254600-69258800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr7:69254800-69259000	Weak transcription	Ovary	ovary
16	chr7:69255000-69276600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr7:69255200-69259600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:69255200-69262200	Weak transcription	Adipose Nuclei	Adipose
19	chr7:69256000-69265200	Weak transcription	Right Atrium	heart
20	chr7:69256400-69259200	Weak transcription	Fetal Brain Female	brain
21	chr7:69256600-69261000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr7:69256600-69264000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr7:69256800-69258000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr7:69256800-69265000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr7:69257000-69258000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr7:69257000-69258400	Weak transcription	Fetal Brain Male	brain
27	chr7:69257000-69258800	Weak transcription	Colon Smooth Muscle	Colon
28	chr7:69257000-69265200	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr7:69257200-69258800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr7:69257200-69265800	Weak transcription	Brain Germinal Matrix	brain

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