Variant report

Variant	rs2533447
Chromosome Location	chr7:69093051-69093052
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10085775	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1014382	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10237145	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10241485	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11765886	0.83[ASN][1000 genomes]
rs12333508	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12531914	0.83[ASN][1000 genomes]
rs13232095	0.81[AMR][1000 genomes]
rs1468588	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2058395	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs210598	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs210600	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs210603	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2253711	0.92[CHB][hapmap];0.93[JPT][hapmap];0.94[YRI][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2533432	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2533434	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2533440	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2533446	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2533449	0.84[EUR][1000 genomes]
rs2533456	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2851485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851488	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2851500	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851504	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2851509	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851512	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851517	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41851	0.83[ASN][1000 genomes]
rs41855	0.83[ASN][1000 genomes]
rs41858	0.83[ASN][1000 genomes]
rs4717521	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs5005279	0.81[CEU][hapmap]
rs521259	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs563740	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs585282	0.83[JPT][hapmap]
rs588004	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs595681	0.81[JPT][hapmap]
rs60739014	0.83[ASN][1000 genomes]
rs608796	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs610930	0.81[JPT][hapmap]
rs611052	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs611573	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs622767	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs624626	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs674865	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6955815	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6957302	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6959766	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6974004	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs720056	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7781403	0.83[ASN][1000 genomes]
rs7793984	0.85[ASN][1000 genomes]
rs7801117	0.83[JPT][hapmap]
rs917616	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9332399	0.83[JPT][hapmap]
rs9692258	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs981291	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs988282	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023885	chr7:68894896-69158290	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538915	chr7:68894896-69158290	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv428169	chr7:69021482-69196743	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69076400-69095400	Weak transcription	Fetal Stomach	stomach
2	chr7:69079800-69093600	Weak transcription	Brain Substantia Nigra	brain
3	chr7:69080000-69095200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr7:69085000-69095400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:69085200-69095000	Weak transcription	Fetal Lung	lung
6	chr7:69086000-69096400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr7:69088400-69094600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:69088400-69095000	Weak transcription	Fetal Muscle Leg	muscle
9	chr7:69088400-69097800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr7:69088600-69095000	Weak transcription	Ovary	ovary
11	chr7:69088600-69095000	Weak transcription	Right Atrium	heart
12	chr7:69089800-69093800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr7:69089800-69094400	Weak transcription	GM12878-XiMat	blood
14	chr7:69089800-69100400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr7:69090200-69093200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr7:69090400-69093600	Weak transcription	Colon Smooth Muscle	Colon
17	chr7:69090400-69095400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:69090400-69096400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr7:69090400-69096400	Weak transcription	Fetal Brain Female	brain
20	chr7:69090400-69100400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr7:69091000-69095200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr7:69091200-69093600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr7:69091200-69094600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr7:69091600-69095400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr7:69091600-69096800	Weak transcription	Fetal Brain Male	brain
26	chr7:69092000-69094200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr7:69092200-69097800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr7:69092600-69093200	Enhancers	Brain Hippocampus Middle	brain
29	chr7:69093000-69094000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr7:69093000-69094200	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr7:69093000-69094200	Enhancers	Primary hematopoietic stem cells	blood
32	chr7:69093000-69094600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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