Variant report

Variant	rs7793984
Chromosome Location	chr7:69210523-69210524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1008379	0.84[ASN][1000 genomes]
rs10085775	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1014382	0.96[ASN][1000 genomes]
rs10237145	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10241485	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11765886	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12333508	0.85[ASN][1000 genomes]
rs12698812	0.87[ASN][1000 genomes]
rs12698814	0.87[ASN][1000 genomes]
rs12698815	0.91[ASN][1000 genomes]
rs12698820	0.85[ASN][1000 genomes]
rs13228464	0.82[ASN][1000 genomes]
rs13232095	0.86[ASN][1000 genomes]
rs13236841	0.89[ASN][1000 genomes]
rs1468588	0.85[ASN][1000 genomes]
rs17353815	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17458097	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2058395	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs210598	0.97[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs210600	1.00[ASN][1000 genomes]
rs210603	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2159679	0.84[ASN][1000 genomes]
rs2253711	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs2533432	0.96[ASN][1000 genomes]
rs2533434	0.95[ASN][1000 genomes]
rs2533440	0.85[ASN][1000 genomes]
rs2533446	0.85[ASN][1000 genomes]
rs2533447	0.85[ASN][1000 genomes]
rs2851485	0.85[ASN][1000 genomes]
rs2851488	0.96[ASN][1000 genomes]
rs2851500	0.85[ASN][1000 genomes]
rs2851504	0.86[ASN][1000 genomes]
rs2851509	0.85[ASN][1000 genomes]
rs2851512	0.85[ASN][1000 genomes]
rs2851517	0.96[ASN][1000 genomes]
rs2903097	0.83[ASN][1000 genomes]
rs34249708	0.83[ASN][1000 genomes]
rs35322474	0.82[ASN][1000 genomes]
rs4717521	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs521259	1.00[ASN][1000 genomes]
rs563740	0.96[ASN][1000 genomes]
rs585282	0.81[JPT][hapmap]
rs588004	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs595681	0.81[JPT][hapmap]
rs60739014	0.98[ASN][1000 genomes]
rs608796	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs610930	0.81[JPT][hapmap]
rs611052	0.96[ASN][1000 genomes]
rs611573	0.96[ASN][1000 genomes]
rs622767	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs624626	0.96[ASN][1000 genomes]
rs6460528	0.96[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs674865	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6955815	0.99[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6957302	0.93[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6959766	0.96[ASN][1000 genomes]
rs6963101	0.83[ASN][1000 genomes]
rs6974004	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs720056	0.85[ASN][1000 genomes]
rs763759	0.92[ASN][1000 genomes]
rs7781403	0.98[ASN][1000 genomes]
rs7801117	0.81[JPT][hapmap]
rs7808773	0.84[ASN][1000 genomes]
rs917616	0.96[ASN][1000 genomes]
rs9332399	0.81[JPT][hapmap]
rs9638575	0.91[ASN][1000 genomes]
rs981291	0.85[ASN][1000 genomes]
rs988282	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv3394718	chr7:69194534-69238432	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1027399	chr7:69197011-69239721	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv538918	chr7:69197011-69239721	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69205000-69213400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:69205200-69214200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:69205200-69214400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:69205200-69221000	Weak transcription	Fetal Brain Male	brain
5	chr7:69205200-69221000	Weak transcription	Right Ventricle	heart
6	chr7:69205400-69210800	Weak transcription	Brain Anterior Caudate	brain
7	chr7:69205400-69211600	Weak transcription	Pancreas	Pancrea
8	chr7:69205400-69213200	Weak transcription	NHEK	skin
9	chr7:69205400-69213400	Weak transcription	Colon Smooth Muscle	Colon
10	chr7:69205400-69217000	Weak transcription	Right Atrium	heart
11	chr7:69205800-69214400	Weak transcription	Fetal Muscle Leg	muscle
12	chr7:69206000-69213600	Weak transcription	Fetal Thymus	thymus
13	chr7:69206000-69214400	Weak transcription	Fetal Stomach	stomach
14	chr7:69206000-69217000	Weak transcription	Fetal Brain Female	brain
15	chr7:69206200-69214000	Weak transcription	Thymus	Thymus
16	chr7:69207600-69210600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:69208800-69213000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr7:69209600-69213400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:69209800-69210600	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr7:69209800-69210600	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr7:69209800-69213800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:69210200-69210600	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr7:69210200-69213000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr7:69210200-69213600	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr7:69210200-69214200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr7:69210200-69219800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr7:69210400-69213000	Weak transcription	Fetal Lung	lung
28	chr7:69210400-69213400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr7:69210400-69214200	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr7:69210400-69214200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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