Variant report

Variant	rs10237145
Chromosome Location	chr7:69230066-69230067
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1008379	0.84[ASN][1000 genomes]
rs10085775	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1014382	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10241485	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11765886	0.98[ASN][1000 genomes]
rs12333508	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12698812	0.87[ASN][1000 genomes]
rs12698814	0.87[ASN][1000 genomes]
rs12698815	0.91[ASN][1000 genomes]
rs12698820	0.85[ASN][1000 genomes]
rs13228464	0.82[ASN][1000 genomes]
rs13232095	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13236841	0.89[ASN][1000 genomes]
rs1468588	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17353815	0.94[ASN][1000 genomes]
rs17458097	0.92[ASN][1000 genomes]
rs2058395	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs210598	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs210599	0.82[EUR][1000 genomes]
rs210600	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs210601	0.82[EUR][1000 genomes]
rs210603	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs210604	0.82[EUR][1000 genomes]
rs210606	0.82[EUR][1000 genomes]
rs2159679	0.84[ASN][1000 genomes]
rs2253711	0.92[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes]
rs2533432	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2533434	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2533440	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2533446	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2533447	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2533449	0.88[EUR][1000 genomes]
rs2533456	0.83[AMR][1000 genomes]
rs2851485	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2851488	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2851500	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2851504	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2851509	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2851512	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2851517	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2903097	0.83[ASN][1000 genomes]
rs34249708	0.83[ASN][1000 genomes]
rs35322474	0.82[ASN][1000 genomes]
rs4717521	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5005279	0.84[CEU][hapmap]
rs521259	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs563740	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs585282	0.83[JPT][hapmap]
rs588004	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs595681	0.83[CEU][hapmap];0.81[JPT][hapmap]
rs60739014	0.98[ASN][1000 genomes]
rs608796	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs610930	0.83[CEU][hapmap];0.81[JPT][hapmap]
rs611052	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs611573	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs622767	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs624626	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6460528	0.93[ASN][1000 genomes]
rs674865	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6955815	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6957302	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6959766	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6963101	0.83[ASN][1000 genomes]
rs6974004	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs720056	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs758680	0.80[AMR][1000 genomes]
rs763759	0.92[ASN][1000 genomes]
rs7781403	0.98[ASN][1000 genomes]
rs7793984	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7801117	0.83[JPT][hapmap]
rs7808773	0.84[ASN][1000 genomes]
rs917616	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9332399	0.83[JPT][hapmap]
rs9638575	0.91[ASN][1000 genomes]
rs9692258	0.83[AMR][1000 genomes]
rs981291	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs988282	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv3394718	chr7:69194534-69238432	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1027399	chr7:69197011-69239721	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv538918	chr7:69197011-69239721	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69217400-69237400	Weak transcription	Fetal Muscle Leg	muscle
2	chr7:69219200-69233600	Weak transcription	Left Ventricle	heart
3	chr7:69223200-69234000	Weak transcription	Brain Hippocampus Middle	brain
4	chr7:69223400-69234000	Weak transcription	Brain Anterior Caudate	brain
5	chr7:69223800-69233800	Weak transcription	Fetal Lung	lung
6	chr7:69224200-69234400	Weak transcription	Fetal Brain Female	brain
7	chr7:69225200-69238800	Weak transcription	Primary B cells from cord blood	blood
8	chr7:69226800-69234000	Weak transcription	Brain Germinal Matrix	brain
9	chr7:69226800-69234400	Weak transcription	Fetal Stomach	stomach
10	chr7:69227200-69237000	Weak transcription	Colon Smooth Muscle	Colon
11	chr7:69227400-69230800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:69227600-69231000	Enhancers	GM12878-XiMat	blood
13	chr7:69227600-69233600	Weak transcription	Brain Substantia Nigra	brain
14	chr7:69227800-69230600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:69228200-69230200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:69228200-69232800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr7:69228400-69230200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr7:69228400-69231000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr7:69228400-69233600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr7:69228600-69230400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr7:69228800-69230200	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr7:69228800-69230400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr7:69229000-69230200	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr7:69229000-69230400	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr7:69229000-69230400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr7:69229000-69230400	Enhancers	Ovary	ovary
27	chr7:69229400-69230200	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr7:69229800-69235400	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr7:69229800-69235600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr7:69229800-69238600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:69230000-69234200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr7:69230000-69234200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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