Variant report

Variant	rs13236841
Chromosome Location	chr7:69389859-69389860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1008379	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10085775	0.89[ASN][1000 genomes]
rs10237145	0.89[ASN][1000 genomes]
rs10241485	0.89[ASN][1000 genomes]
rs11765886	0.87[ASN][1000 genomes]
rs12113555	0.86[ASN][1000 genomes]
rs12698812	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12698814	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12698815	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12698820	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12698826	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12698838	0.88[ASN][1000 genomes]
rs12698841	0.88[ASN][1000 genomes]
rs12698843	0.87[ASN][1000 genomes]
rs12698846	0.87[ASN][1000 genomes]
rs12698847	0.87[ASN][1000 genomes]
rs12698850	0.87[ASN][1000 genomes]
rs12698853	0.87[ASN][1000 genomes]
rs12698856	0.86[ASN][1000 genomes]
rs12698857	0.86[ASN][1000 genomes]
rs12698859	0.83[ASN][1000 genomes]
rs12698862	0.84[ASN][1000 genomes]
rs13228464	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13231497	0.88[ASN][1000 genomes]
rs13232095	0.84[ASN][1000 genomes]
rs13242485	0.88[ASN][1000 genomes]
rs13247796	0.81[ASN][1000 genomes]
rs1476104	0.87[ASN][1000 genomes]
rs17353815	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17365011	0.85[ASN][1000 genomes]
rs17365333	0.87[ASN][1000 genomes]
rs17458097	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1880369	0.86[ASN][1000 genomes]
rs2058395	0.89[ASN][1000 genomes]
rs210598	0.87[ASN][1000 genomes]
rs210600	0.89[ASN][1000 genomes]
rs210603	0.89[ASN][1000 genomes]
rs2159679	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2533432	0.85[ASN][1000 genomes]
rs2851488	0.85[ASN][1000 genomes]
rs2851517	0.85[ASN][1000 genomes]
rs2903097	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34249708	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35322474	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4717521	0.89[ASN][1000 genomes]
rs521259	0.89[ASN][1000 genomes]
rs563740	0.85[ASN][1000 genomes]
rs588004	0.85[ASN][1000 genomes]
rs60739014	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs608796	0.87[ASN][1000 genomes]
rs611052	0.85[ASN][1000 genomes]
rs611573	0.85[ASN][1000 genomes]
rs622767	0.87[ASN][1000 genomes]
rs624626	0.85[ASN][1000 genomes]
rs6460528	0.83[ASN][1000 genomes]
rs674865	0.85[ASN][1000 genomes]
rs6943610	0.87[ASN][1000 genomes]
rs6946066	0.86[ASN][1000 genomes]
rs6955815	0.89[ASN][1000 genomes]
rs6959766	0.87[ASN][1000 genomes]
rs6963101	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6964139	0.84[ASN][1000 genomes]
rs6974004	0.89[ASN][1000 genomes]
rs735060	0.87[ASN][1000 genomes]
rs763759	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7779308	0.88[ASN][1000 genomes]
rs7781403	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7782771	0.86[ASN][1000 genomes]
rs7783039	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7783592	0.86[ASN][1000 genomes]
rs7790084	0.87[ASN][1000 genomes]
rs7791954	0.86[ASN][1000 genomes]
rs7793984	0.89[ASN][1000 genomes]
rs7796592	0.84[ASN][1000 genomes]
rs7800317	0.80[AMR][1000 genomes]
rs7800759	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7803814	0.86[ASN][1000 genomes]
rs7807263	0.86[ASN][1000 genomes]
rs7808773	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs917616	0.85[ASN][1000 genomes]
rs9638575	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9638582	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv492242	chr7:69330737-69520566	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1017390	chr7:69339404-69406232	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv538920	chr7:69339404-69406232	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv916265	chr7:69367265-69433076	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1031593	chr7:69367316-69445052	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv538921	chr7:69367316-69445052	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv1018289	chr7:69383450-69650885	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv538922	chr7:69383450-69650885	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69377000-69391000	Weak transcription	Fetal Lung	lung
2	chr7:69377200-69392400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:69377800-69402000	Weak transcription	Ovary	ovary
4	chr7:69379800-69392800	Weak transcription	Fetal Brain Male	brain
5	chr7:69380200-69396000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:69386000-69399400	Weak transcription	Fetal Kidney	kidney
7	chr7:69386200-69392800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr7:69387600-69409400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr7:69387800-69392400	Weak transcription	Fetal Intestine Small	intestine
10	chr7:69388400-69392600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:69389800-69399600	Weak transcription	Stomach Smooth Muscle	stomach

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