Variant report

Variant	rs13231497
Chromosome Location	chr7:69495934-69495935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:69492662..69494533-chr7:69494789..69496993,2	MCF-7	breast:

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs1008379	0.81[ASN][1000 genomes]
rs10499813	0.96[ASN][1000 genomes]
rs12112758	0.82[AFR][1000 genomes]
rs12113555	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12155144	0.80[ASN][1000 genomes]
rs12667561	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12669794	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12673575	0.83[AFR][1000 genomes]
rs12698812	0.82[ASN][1000 genomes]
rs12698814	0.82[ASN][1000 genomes]
rs12698815	0.86[ASN][1000 genomes]
rs12698820	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12698826	0.83[AMR][1000 genomes]
rs12698835	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12698838	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12698841	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12698843	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12698846	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12698847	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12698850	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12698851	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12698853	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12698856	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12698857	0.92[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12698859	0.92[ASN][1000 genomes]
rs12698861	0.83[AFR][1000 genomes]
rs12698862	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12698864	0.85[AFR][1000 genomes]
rs12698865	0.83[AFR][1000 genomes]
rs12698867	0.83[AFR][1000 genomes]
rs12698869	0.96[ASN][1000 genomes]
rs12698873	0.82[AFR][1000 genomes]
rs12698875	0.93[ASN][1000 genomes]
rs12698879	0.89[ASN][1000 genomes]
rs12698880	0.89[ASN][1000 genomes]
rs12698884	0.86[ASN][1000 genomes]
rs12698886	0.84[ASN][1000 genomes]
rs12698892	0.80[ASN][1000 genomes]
rs13228464	0.81[ASN][1000 genomes]
rs13229395	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13236841	0.88[ASN][1000 genomes]
rs13242485	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13247796	0.84[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs1404275	0.89[ASN][1000 genomes]
rs1476104	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1476105	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17365011	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17365333	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17365375	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17458097	0.85[ASN][1000 genomes]
rs17462837	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17604001	0.87[ASN][1000 genomes]
rs1880369	0.96[ASN][1000 genomes]
rs2159679	0.81[ASN][1000 genomes]
rs2903097	0.80[ASN][1000 genomes]
rs34249708	0.80[ASN][1000 genomes]
rs34519726	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35062112	0.89[ASN][1000 genomes]
rs35317642	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4318956	0.84[AFR][1000 genomes]
rs4475377	0.89[ASN][1000 genomes]
rs4623296	0.85[AFR][1000 genomes]
rs58849135	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60739014	0.80[ASN][1000 genomes]
rs6460539	0.85[AFR][1000 genomes]
rs67847242	0.85[AFR][1000 genomes]
rs6943610	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6943630	0.93[ASN][1000 genomes]
rs6946066	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6948676	0.91[ASN][1000 genomes]
rs6951909	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6963101	0.80[ASN][1000 genomes]
rs6964139	0.94[ASN][1000 genomes]
rs6970670	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6978919	0.84[ASN][1000 genomes]
rs735060	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs763759	0.85[ASN][1000 genomes]
rs7779308	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7780640	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7781403	0.80[ASN][1000 genomes]
rs7782771	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7783039	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7783592	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7783748	0.82[AFR][1000 genomes]
rs7790084	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7791954	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7796592	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7800317	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7800759	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7803814	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7807263	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7808588	0.89[ASN][1000 genomes]
rs7808773	0.81[ASN][1000 genomes]
rs870919	0.91[ASN][1000 genomes]
rs877188	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs917717	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9638575	0.86[ASN][1000 genomes]
rs9638582	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv492242	chr7:69330737-69520566	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1018289	chr7:69383450-69650885	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv538922	chr7:69383450-69650885	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1034281	chr7:69403828-69548378	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv538923	chr7:69403828-69548378	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1034182	chr7:69406172-69529294	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv538924	chr7:69406172-69529294	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv2758119	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv2759536	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv607429	chr7:69430748-69553093	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv1028705	chr7:69453983-69524628	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv1020488	chr7:69465268-69671126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69477200-69507600	Weak transcription	Right Atrium	heart
2	chr7:69487000-69496200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:69487000-69497600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr7:69491400-69496000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:69491400-69496200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr7:69491600-69496000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:69491600-69499800	Weak transcription	Left Ventricle	heart
8	chr7:69492600-69499800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr7:69493400-69508000	Weak transcription	Fetal Brain Male	brain
10	chr7:69493600-69497400	Weak transcription	Primary B cells from cord blood	blood
11	chr7:69494000-69496000	Weak transcription	Dnd41	blood
12	chr7:69494400-69496400	Enhancers	Fetal Heart	heart
13	chr7:69495000-69496800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:69495200-69501000	Weak transcription	Thymus	Thymus
15	chr7:69495400-69501000	Weak transcription	Fetal Thymus	thymus
16	chr7:69495600-69496200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:69495600-69496400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:69495600-69496600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:69495600-69498200	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr7:69495800-69496200	Enhancers	Brain Hippocampus Middle	brain
21	chr7:69495800-69496400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:69495800-69496400	Enhancers	Fetal Intestine Small	intestine
23	chr7:69495800-69497400	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr7:69495800-69498000	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr7:69495800-69498400	Enhancers	HUES48 Cell Line	embryonic stem cell

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