Variant report

Variant	rs6963101
Chromosome Location	chr7:69344357-69344358
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1008379	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10085775	0.83[ASN][1000 genomes]
rs10237145	0.83[ASN][1000 genomes]
rs10241485	0.83[ASN][1000 genomes]
rs11765886	0.81[ASN][1000 genomes]
rs12698812	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12698814	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12698815	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12698820	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12698826	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12698838	0.80[ASN][1000 genomes]
rs12698841	0.80[ASN][1000 genomes]
rs13228464	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13231497	0.80[ASN][1000 genomes]
rs13232095	0.90[ASN][1000 genomes]
rs13236841	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13242485	0.80[ASN][1000 genomes]
rs17353815	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17365011	0.83[ASN][1000 genomes]
rs17458097	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2058395	0.83[ASN][1000 genomes]
rs210598	0.87[ASN][1000 genomes]
rs210600	0.83[ASN][1000 genomes]
rs210603	0.83[ASN][1000 genomes]
rs2159679	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2865805	0.80[EUR][1000 genomes]
rs2903097	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34249708	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35322474	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4717521	0.83[ASN][1000 genomes]
rs521259	0.83[ASN][1000 genomes]
rs60359704	0.81[EUR][1000 genomes]
rs60739014	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs608796	0.87[ASN][1000 genomes]
rs622767	0.87[ASN][1000 genomes]
rs6955815	0.83[ASN][1000 genomes]
rs6959766	0.87[ASN][1000 genomes]
rs6974004	0.83[ASN][1000 genomes]
rs763759	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7779308	0.80[ASN][1000 genomes]
rs7781403	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7783039	0.82[AMR][1000 genomes]
rs7793984	0.83[ASN][1000 genomes]
rs7796592	0.82[ASN][1000 genomes]
rs7800317	0.82[AMR][1000 genomes]
rs7808773	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9638575	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv492242	chr7:69330737-69520566	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1017390	chr7:69339404-69406232	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv538920	chr7:69339404-69406232	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69311400-69371600	Weak transcription	Primary B cells from cord blood	blood
2	chr7:69337400-69345000	Weak transcription	Fetal Brain Female	brain
3	chr7:69337400-69345200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr7:69337600-69345600	Weak transcription	Colon Smooth Muscle	Colon
5	chr7:69337600-69354600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr7:69337800-69345000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr7:69338400-69344600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:69338400-69344600	Weak transcription	GM12878-XiMat	blood
9	chr7:69338400-69350600	Weak transcription	Brain Anterior Caudate	brain
10	chr7:69338400-69367200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr7:69338600-69345000	Weak transcription	Thymus	Thymus
12	chr7:69339200-69344600	Weak transcription	Fetal Thymus	thymus
13	chr7:69339400-69344400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr7:69342800-69344800	Weak transcription	Primary B cells from peripheral blood	blood
15	chr7:69342800-69345600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr7:69343200-69345200	Weak transcription	Fetal Brain Male	brain
17	chr7:69343600-69344800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr7:69343600-69350400	Weak transcription	Brain Substantia Nigra	brain
19	chr7:69343600-69354200	Weak transcription	Brain Angular Gyrus	brain
20	chr7:69344000-69345200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr7:69344000-69345200	Weak transcription	Brain Germinal Matrix	brain
22	chr7:69344000-69354800	Weak transcription	Brain Cingulate Gyrus	brain

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