Variant report

Variant	rs2865805
Chromosome Location	chr7:69318195-69318196
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:69316498..69320411-chr7:69321802..69325928,4	K562	blood:

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs1014417	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10245786	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10257549	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10259748	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10452738	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11508453	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11761141	0.84[EUR][1000 genomes]
rs11763186	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11767997	0.81[ASN][1000 genomes]
rs11974201	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11978431	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12333974	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12698813	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12698816	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12698822	0.85[EUR][1000 genomes]
rs12698825	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12698830	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13226538	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13237811	0.82[ASN][1000 genomes]
rs17140933	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17140980	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17140982	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1860488	0.82[ASN][1000 genomes]
rs210591	0.87[ASN][1000 genomes]
rs210593	0.87[ASN][1000 genomes]
rs210594	0.90[ASN][1000 genomes]
rs210596	0.87[ASN][1000 genomes]
rs210601	0.87[ASN][1000 genomes]
rs210604	0.87[ASN][1000 genomes]
rs210606	0.85[ASN][1000 genomes]
rs2159679	0.81[EUR][1000 genomes]
rs2533431	0.82[ASN][1000 genomes]
rs2533433	0.82[ASN][1000 genomes]
rs2533449	0.82[ASN][1000 genomes]
rs2533458	0.82[ASN][1000 genomes]
rs2851487	0.82[ASN][1000 genomes]
rs2851514	0.82[ASN][1000 genomes]
rs28770244	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2903097	0.81[EUR][1000 genomes]
rs34221396	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34617709	0.83[EUR][1000 genomes]
rs35696945	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4717520	0.86[ASN][1000 genomes]
rs4718906	0.82[ASN][1000 genomes]
rs505949	0.82[ASN][1000 genomes]
rs513150	0.82[ASN][1000 genomes]
rs532820	0.83[ASN][1000 genomes]
rs547630	0.82[ASN][1000 genomes]
rs55990156	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs565505	0.82[ASN][1000 genomes]
rs576193	0.82[ASN][1000 genomes]
rs576293	0.85[ASN][1000 genomes]
rs585282	0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs589983	0.83[ASN][1000 genomes]
rs590609	0.85[ASN][1000 genomes]
rs593063	0.85[ASN][1000 genomes]
rs595681	0.86[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs60359704	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs610930	0.86[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs626767	0.82[ASN][1000 genomes]
rs627981	0.82[ASN][1000 genomes]
rs645245	0.82[ASN][1000 genomes]
rs6460532	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs646233	0.81[ASN][1000 genomes]
rs649200	0.83[ASN][1000 genomes]
rs6943309	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6950485	0.81[ASN][1000 genomes]
rs6951921	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6955261	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6958981	0.86[EUR][1000 genomes]
rs6961164	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6963101	0.80[EUR][1000 genomes]
rs6963882	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6966036	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6978134	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6979355	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6980307	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs726372	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7779010	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7786073	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7795152	0.83[ASN][1000 genomes]
rs7796973	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7797340	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7801117	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7809145	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7809934	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs877687	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9332399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv532781	chr7:69297250-69330796	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69311000-69320800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:69311400-69371600	Weak transcription	Primary B cells from cord blood	blood
3	chr7:69311600-69323600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr7:69313600-69321200	Weak transcription	Brain Germinal Matrix	brain
5	chr7:69313600-69321600	Weak transcription	Colon Smooth Muscle	Colon
6	chr7:69313600-69323800	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:69313800-69321800	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links