Variant report

Variant	rs7809145
Chromosome Location	chr7:69271250-69271251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 110 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs1008379	0.81[EUR][1000 genomes]
rs1014417	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10245786	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10257549	0.84[ASN][1000 genomes]
rs10259748	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10452738	0.84[ASN][1000 genomes]
rs11508453	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11761141	0.80[AMR][1000 genomes]
rs11763186	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11974201	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11978431	0.84[ASN][1000 genomes]
rs12333974	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12698813	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12698816	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12698822	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12698825	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12698830	0.84[ASN][1000 genomes]
rs13226538	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13237811	0.82[ASN][1000 genomes]
rs17140933	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17140980	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17140982	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17353815	0.81[EUR][1000 genomes]
rs17458097	0.80[EUR][1000 genomes]
rs1860488	0.92[ASN][1000 genomes]
rs1985165	0.86[ASN][1000 genomes]
rs210591	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs210593	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs210594	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs210596	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs210599	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs210601	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs210604	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs210606	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2533427	0.91[ASN][1000 genomes]
rs2533428	0.91[ASN][1000 genomes]
rs2533429	0.91[ASN][1000 genomes]
rs2533430	0.86[ASN][1000 genomes]
rs2533431	0.92[ASN][1000 genomes]
rs2533433	0.92[ASN][1000 genomes]
rs2533435	0.87[ASN][1000 genomes]
rs2533449	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2533458	0.92[ASN][1000 genomes]
rs2851483	0.91[ASN][1000 genomes]
rs2851484	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2851487	0.92[ASN][1000 genomes]
rs2851503	0.82[ASN][1000 genomes]
rs2851505	0.81[ASN][1000 genomes]
rs2851506	0.82[ASN][1000 genomes]
rs2851507	0.82[ASN][1000 genomes]
rs2851514	0.92[ASN][1000 genomes]
rs2851515	0.91[ASN][1000 genomes]
rs2851516	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2865805	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28770244	0.84[ASN][1000 genomes]
rs34221396	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35696945	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4717520	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4718906	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs505949	0.92[ASN][1000 genomes]
rs513150	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs532820	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs547630	0.92[ASN][1000 genomes]
rs55990156	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs565505	0.92[ASN][1000 genomes]
rs576193	0.92[ASN][1000 genomes]
rs576293	0.96[ASN][1000 genomes]
rs585282	0.83[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.93[YRI][hapmap];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs589983	0.94[ASN][1000 genomes]
rs590609	0.96[ASN][1000 genomes]
rs593063	0.96[ASN][1000 genomes]
rs595681	0.94[ASW][hapmap];0.83[CEU][hapmap];0.85[CHB][hapmap];0.97[CHD][hapmap];0.93[JPT][hapmap];0.96[LWK][hapmap];0.93[MKK][hapmap];0.89[TSI][hapmap];0.93[YRI][hapmap];0.96[ASN][1000 genomes]
rs60359704	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60739014	0.81[EUR][1000 genomes]
rs610930	0.94[ASW][hapmap];0.83[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.96[LWK][hapmap];0.93[MKK][hapmap];0.89[TSI][hapmap];0.93[YRI][hapmap];0.96[ASN][1000 genomes]
rs626767	0.92[ASN][1000 genomes]
rs627981	0.92[ASN][1000 genomes]
rs645245	0.92[ASN][1000 genomes]
rs6460532	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs646233	0.91[ASN][1000 genomes]
rs649200	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6943309	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6951921	0.84[ASN][1000 genomes]
rs6955261	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6958981	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6961164	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6963882	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6966036	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6978134	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6979355	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6980307	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs726372	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs763759	0.81[EUR][1000 genomes]
rs7779010	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7781403	0.80[EUR][1000 genomes]
rs7786073	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7795152	0.82[ASN][1000 genomes]
rs7796973	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7797340	0.84[ASN][1000 genomes]
rs7801117	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7808773	0.81[EUR][1000 genomes]
rs7809934	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs877687	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9332399	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7809145	VKORC1L1	cis	parietal	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69253400-69278800	Weak transcription	Fetal Stomach	stomach
2	chr7:69255000-69276600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:69265800-69273000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:69265800-69273600	Weak transcription	HSMMtube	muscle
5	chr7:69265800-69282600	Weak transcription	Pancreas	Pancrea
6	chr7:69266200-69276600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:69267200-69272600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:69267200-69272600	Weak transcription	Fetal Muscle Leg	muscle
9	chr7:69267200-69275000	Weak transcription	Psoas Muscle	Psoas
10	chr7:69267200-69278400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr7:69267600-69277200	Weak transcription	Colon Smooth Muscle	Colon
12	chr7:69267800-69279200	Weak transcription	Ovary	ovary
13	chr7:69268200-69272800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:69268200-69278000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr7:69268400-69278200	Weak transcription	Right Atrium	heart
16	chr7:69269000-69272400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr7:69269400-69271800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr7:69270200-69278000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr7:69270200-69278800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr7:69270200-69279000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr7:69270400-69273600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr7:69270400-69274600	Weak transcription	Brain Angular Gyrus	brain
23	chr7:69270600-69276800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr7:69270800-69273800	Enhancers	GM12878-XiMat	blood
25	chr7:69271200-69278800	Weak transcription	Fetal Brain Male	brain

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