Variant report

Variant	rs13237811
Chromosome Location	chr7:69429577-69429578
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1014417	0.82[ASN][1000 genomes]
rs10234205	0.81[AMR][1000 genomes]
rs10235487	0.83[ASN][1000 genomes]
rs10245786	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10257549	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10259748	0.82[ASN][1000 genomes]
rs10268235	0.82[ASN][1000 genomes]
rs10270616	0.81[AMR][1000 genomes]
rs10273270	0.80[AMR][1000 genomes]
rs1035010	0.83[ASN][1000 genomes]
rs1035013	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10452738	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11508453	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11761141	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11763186	0.82[ASN][1000 genomes]
rs11767997	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11974201	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11978431	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12333974	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12698813	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12698816	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12698822	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12698825	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12698830	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12698855	0.83[ASN][1000 genomes]
rs13226538	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13228123	0.83[ASN][1000 genomes]
rs1558413	0.80[AMR][1000 genomes]
rs17140933	0.85[ASN][1000 genomes]
rs17140980	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17140982	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2159678	0.81[AMR][1000 genomes]
rs2865805	0.82[ASN][1000 genomes]
rs2866075	0.80[AMR][1000 genomes]
rs28770244	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34221396	0.82[ASN][1000 genomes]
rs34617709	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35222730	0.83[AMR][1000 genomes]
rs35696945	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55990156	0.82[ASN][1000 genomes]
rs60359704	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6415223	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6460532	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6460536	0.84[ASN][1000 genomes]
rs6944725	0.81[AMR][1000 genomes]
rs6949651	0.86[ASN][1000 genomes]
rs6950485	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6951921	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6953170	0.86[ASN][1000 genomes]
rs6955261	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6958981	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6961164	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6962999	0.84[ASN][1000 genomes]
rs6963882	0.86[ASN][1000 genomes]
rs6963904	0.81[AMR][1000 genomes]
rs6966036	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6974687	0.81[AMR][1000 genomes]
rs6978134	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6979355	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs726372	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73442405	0.81[AMR][1000 genomes]
rs7779010	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7786073	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7791101	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7794623	0.85[ASN][1000 genomes]
rs7795152	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7796973	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7797340	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7801117	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7809145	0.82[ASN][1000 genomes]
rs7809303	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7809934	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs877687	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9332399	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv492242	chr7:69330737-69520566	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv916265	chr7:69367265-69433076	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1031593	chr7:69367316-69445052	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv538921	chr7:69367316-69445052	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1018289	chr7:69383450-69650885	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv538922	chr7:69383450-69650885	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv1034281	chr7:69403828-69548378	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv538923	chr7:69403828-69548378	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1034182	chr7:69406172-69529294	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv538924	chr7:69406172-69529294	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	esv2758119	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv2759536	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69425800-69430000	Enhancers	Fetal Intestine Small	intestine
2	chr7:69426800-69430000	Enhancers	Fetal Intestine Large	intestine
3	chr7:69426800-69430200	Enhancers	Primary hematopoietic stem cells	blood
4	chr7:69426800-69430400	Enhancers	Primary B cells from peripheral blood	blood
5	chr7:69427400-69429800	Weak transcription	Gastric	stomach
6	chr7:69427800-69432000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:69427800-69432200	Weak transcription	Esophagus	oesophagus
8	chr7:69427800-69432200	Weak transcription	Left Ventricle	heart
9	chr7:69427800-69432200	Weak transcription	Lung	lung
10	chr7:69427800-69432400	Weak transcription	Pancreas	Pancrea
11	chr7:69428000-69432000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr7:69428000-69432000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr7:69428000-69432000	Weak transcription	Fetal Brain Male	brain
14	chr7:69428000-69432000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr7:69428000-69432200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:69428000-69432200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:69428000-69432400	Enhancers	Fetal Heart	heart
18	chr7:69428200-69430600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr7:69428200-69430600	Enhancers	Fetal Thymus	thymus
20	chr7:69428200-69432000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr7:69428200-69432000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr7:69428200-69432000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr7:69428200-69432000	Weak transcription	Brain Substantia Nigra	brain
24	chr7:69428200-69432200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr7:69428200-69432200	Weak transcription	Adipose Nuclei	Adipose
26	chr7:69428200-69432200	Weak transcription	Brain Anterior Caudate	brain
27	chr7:69428200-69432200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr7:69428200-69432200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr7:69428200-69432400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr7:69428400-69432200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr7:69428400-69432200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr7:69428600-69431200	Weak transcription	Fetal Kidney	kidney
33	chr7:69428600-69431600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:69428600-69431600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr7:69428600-69431800	Weak transcription	Stomach Smooth Muscle	stomach
36	chr7:69428600-69432000	Weak transcription	Colon Smooth Muscle	Colon
37	chr7:69428600-69432000	Weak transcription	Fetal Brain Female	brain
38	chr7:69428600-69432000	Weak transcription	Fetal Muscle Leg	muscle
39	chr7:69428600-69432200	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr7:69428600-69432200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr7:69428600-69432200	Weak transcription	Brain Cingulate Gyrus	brain
42	chr7:69428600-69432200	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr7:69428600-69432200	Weak transcription	Psoas Muscle	Psoas
44	chr7:69428600-69432200	Weak transcription	Right Atrium	heart
45	chr7:69428600-69432200	Weak transcription	Right Ventricle	heart
46	chr7:69428600-69432600	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr7:69428800-69430800	Enhancers	Thymus	Thymus
48	chr7:69428800-69431600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr7:69428800-69432000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr7:69428800-69432200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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