Variant report
Variant | rs10270616 |
---|---|
Chromosome Location | chr7:69547466-69547467 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10229027 | 0.80[ASN][1000 genomes] |
rs10229155 | 0.82[ASN][1000 genomes] |
rs10234205 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10235487 | 0.94[AFR][1000 genomes];0.85[AMR][1000 genomes] |
rs10235860 | 0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10246631 | 0.80[ASN][1000 genomes] |
rs10251306 | 0.82[AFR][1000 genomes];0.91[ASN][1000 genomes] |
rs10256186 | 0.92[ASN][1000 genomes] |
rs10257549 | 0.94[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs10268235 | 0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs10273270 | 0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10279392 | 0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1035010 | 0.88[AFR][1000 genomes];0.82[AMR][1000 genomes] |
rs1035013 | 0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs10452738 | 0.91[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs10499812 | 0.92[ASN][1000 genomes] |
rs11761141 | 0.86[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs11767997 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs11978431 | 0.94[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs12669794 | 0.80[EUR][1000 genomes] |
rs12698816 | 0.80[AMR][1000 genomes] |
rs12698822 | 0.86[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs12698825 | 0.87[AMR][1000 genomes] |
rs12698830 | 0.94[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs12698842 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12698843 | 0.81[EUR][1000 genomes] |
rs12698847 | 0.80[EUR][1000 genomes] |
rs12698849 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12698850 | 0.80[EUR][1000 genomes] |
rs12698853 | 0.80[EUR][1000 genomes] |
rs12698866 | 0.92[ASN][1000 genomes] |
rs12698877 | 0.86[ASN][1000 genomes] |
rs12698899 | 0.80[ASN][1000 genomes] |
rs13226538 | 0.87[AMR][1000 genomes] |
rs13237811 | 0.81[AMR][1000 genomes] |
rs1464786 | 0.80[ASN][1000 genomes] |
rs1476105 | 0.80[EUR][1000 genomes] |
rs1558413 | 0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs17365333 | 0.81[EUR][1000 genomes] |
rs17365375 | 0.81[EUR][1000 genomes] |
rs17462837 | 0.80[EUR][1000 genomes] |
rs2159678 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2866075 | 0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs28770244 | 0.94[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs34519726 | 0.80[EUR][1000 genomes] |
rs34617709 | 0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs35222730 | 0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs35317642 | 0.80[EUR][1000 genomes] |
rs35696945 | 0.84[AMR][1000 genomes] |
rs6415223 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs6460536 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs6943555 | 0.80[ASN][1000 genomes] |
rs6944725 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6949651 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs6950485 | 0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6951921 | 0.94[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs6953170 | 0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs6957126 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs6958981 | 0.87[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs6961164 | 0.86[AMR][1000 genomes] |
rs6962999 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs6963904 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6966036 | 0.80[AMR][1000 genomes] |
rs6969375 | 0.85[ASN][1000 genomes] |
rs6974687 | 0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6979355 | 0.80[AMR][1000 genomes] |
rs73442405 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs735060 | 0.81[EUR][1000 genomes] |
rs7780640 | 0.80[EUR][1000 genomes] |
rs7781035 | 0.88[ASN][1000 genomes] |
rs7788024 | 0.88[ASN][1000 genomes] |
rs7790934 | 0.82[AFR][1000 genomes];0.88[ASN][1000 genomes] |
rs7791101 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs7792964 | 0.83[ASN][1000 genomes] |
rs7794623 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs7795152 | 0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs7796080 | 0.82[AFR][1000 genomes] |
rs7797340 | 0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs7808540 | 0.88[ASN][1000 genomes] |
rs7809303 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs7809934 | 0.87[AMR][1000 genomes] |
rs9638268 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs9638582 | 0.80[EUR][1000 genomes] |
rs9918496 | 0.80[ASN][1000 genomes] |
rs9918544 | 0.80[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1021538 | chr7:69130236-69575753 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
2 | nsv538917 | chr7:69130236-69575753 | Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | nsv817276 | chr7:69130237-69736834 | Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | nsv1018749 | chr7:69149029-69995112 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
5 | nsv1018289 | chr7:69383450-69650885 | Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
6 | nsv538922 | chr7:69383450-69650885 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
7 | nsv532782 | chr7:69383651-70189959 | Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
8 | nsv1034281 | chr7:69403828-69548378 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
9 | nsv538923 | chr7:69403828-69548378 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
10 | esv2758119 | chr7:69412504-69594161 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
11 | esv2759536 | chr7:69412504-69594161 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
12 | nsv607429 | chr7:69430748-69553093 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
13 | nsv1020488 | chr7:69465268-69671126 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
14 | nsv1022932 | chr7:69496659-69564369 | ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
15 | nsv538925 | chr7:69496659-69564369 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
16 | nsv1034817 | chr7:69507871-69578892 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
17 | nsv538926 | chr7:69507871-69578892 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
18 | nsv1028975 | chr7:69513266-69578892 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
19 | nsv916345 | chr7:69520612-69784809 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:69537600-69547600 | Weak transcription | Ovary | ovary |
2 | chr7:69541000-69548200 | Weak transcription | Psoas Muscle | Psoas |
3 | chr7:69545200-69548000 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
4 | chr7:69545200-69548200 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
5 | chr7:69545200-69562200 | Weak transcription | Primary B cells from cord blood | blood |
6 | chr7:69546600-69547800 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
7 | chr7:69546600-69547800 | Enhancers | Fetal Stomach | stomach |
8 | chr7:69546600-69547800 | Enhancers | NHDF-Ad | bronchial |
9 | chr7:69546800-69547600 | Enhancers | Muscle Satellite Cultured Cells | -- |
10 | chr7:69546800-69548000 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
11 | chr7:69547000-69547600 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
12 | chr7:69547000-69548000 | Weak transcription | Fetal Muscle Leg | muscle |
13 | chr7:69547000-69548200 | Enhancers | Adipose Nuclei | Adipose |
14 | chr7:69547400-69547800 | Flanking Active TSS | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |