Variant report

Variant	rs7790934
Chromosome Location	chr7:69701965-69701966
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:69701411..69704010-chr7:69707383..69709265,2	K562	blood:

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10229027	0.92[ASN][1000 genomes]
rs10229155	0.91[ASN][1000 genomes]
rs10234205	0.86[ASN][1000 genomes]
rs10234614	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10234892	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10235487	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10235781	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10235860	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10244275	0.91[ASN][1000 genomes]
rs10246631	0.92[ASN][1000 genomes]
rs10251306	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10254839	0.91[ASN][1000 genomes]
rs10256062	0.85[ASN][1000 genomes]
rs10256186	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10258962	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10268924	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10270616	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10273270	0.86[ASN][1000 genomes]
rs10277411	0.91[ASN][1000 genomes]
rs10279392	0.88[ASN][1000 genomes]
rs1035010	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10499812	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10950199	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11766329	0.91[ASN][1000 genomes]
rs12112638	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12155138	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12698842	0.86[ASN][1000 genomes]
rs12698849	0.88[ASN][1000 genomes]
rs12698855	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12698866	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12698871	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12698877	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12698895	0.88[CEU][hapmap]
rs12698896	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs12698899	0.92[ASN][1000 genomes]
rs13221252	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13228123	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1357759	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs1464786	0.92[ASN][1000 genomes]
rs1474368	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1558413	0.82[ASN][1000 genomes]
rs2159678	0.83[ASN][1000 genomes]
rs2222544	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2280613	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2280614	0.91[ASN][1000 genomes]
rs2866075	0.82[ASN][1000 genomes]
rs2866277	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35222730	0.85[ASN][1000 genomes]
rs3846984	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6460537	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6460541	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6460542	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6651055	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6943555	0.92[ASN][1000 genomes]
rs6944725	0.86[ASN][1000 genomes]
rs6950647	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6953170	0.81[AMR][1000 genomes]
rs6953344	0.86[ASN][1000 genomes]
rs6957740	0.91[ASN][1000 genomes]
rs6961345	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6962999	0.82[AMR][1000 genomes]
rs6963904	0.86[ASN][1000 genomes]
rs6967697	0.91[ASN][1000 genomes]
rs6969375	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6974687	0.86[ASN][1000 genomes]
rs6975279	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6976581	0.81[EUR][1000 genomes]
rs73442405	0.85[ASN][1000 genomes]
rs7781035	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7781401	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7781727	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7784584	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7787612	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7788024	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7790729	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7791101	0.81[AFR][1000 genomes]
rs7792775	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7792964	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7796080	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7798991	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7799308	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7805470	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7808540	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8180850	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs870920	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs873835	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9638268	0.91[ASN][1000 genomes]
rs9918496	0.92[ASN][1000 genomes]
rs9918544	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv916345	chr7:69520612-69784809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv607430	chr7:69658160-69702047	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv869342	chr7:69671501-69958576	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1030911	chr7:69675761-69721623	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv607431	chr7:69699074-69828729	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69696200-69702400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:69696200-69702600	Weak transcription	Primary B cells from cord blood	blood
3	chr7:69696200-69703000	Weak transcription	Fetal Muscle Leg	muscle
4	chr7:69696200-69703200	Weak transcription	Fetal Lung	lung
5	chr7:69696600-69707000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:69697600-69706400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr7:69698400-69702800	Weak transcription	Fetal Stomach	stomach
8	chr7:69700800-69702600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:69701800-69702400	Enhancers	GM12878-XiMat	blood

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