Variant report

Variant	rs6962999
Chromosome Location	chr7:69584981-69584982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 131 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10234205	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10234844	0.81[ASN][1000 genomes]
rs10235487	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10235781	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10235860	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10237530	0.81[ASN][1000 genomes]
rs10237685	0.81[ASN][1000 genomes]
rs10245786	0.81[ASN][1000 genomes]
rs10251306	0.87[AMR][1000 genomes]
rs10251416	0.81[ASN][1000 genomes]
rs10256186	0.81[AMR][1000 genomes]
rs10257549	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10258298	0.81[ASN][1000 genomes]
rs10258962	0.87[ASN][1000 genomes]
rs10268235	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10268924	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10270616	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10273270	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10279392	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10280622	0.81[ASN][1000 genomes]
rs1035010	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1035013	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10452738	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10486875	0.81[ASN][1000 genomes]
rs10499812	0.81[AMR][1000 genomes]
rs11508453	0.81[ASN][1000 genomes]
rs11767997	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11978431	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12112638	0.85[ASN][1000 genomes]
rs12155138	0.81[ASN][1000 genomes]
rs12374873	0.81[ASN][1000 genomes]
rs12669794	0.81[EUR][1000 genomes]
rs12698816	0.82[ASN][1000 genomes]
rs12698825	0.88[ASN][1000 genomes]
rs12698830	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12698842	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12698843	0.80[EUR][1000 genomes]
rs12698847	0.81[EUR][1000 genomes]
rs12698849	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12698850	0.81[EUR][1000 genomes]
rs12698853	0.81[EUR][1000 genomes]
rs12698855	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12698866	0.81[AMR][1000 genomes]
rs12698871	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12698877	0.82[AMR][1000 genomes]
rs12698895	0.81[ASN][1000 genomes]
rs12698896	0.81[ASN][1000 genomes]
rs12698897	0.81[ASN][1000 genomes]
rs13221252	0.81[ASN][1000 genomes]
rs13226538	0.86[ASN][1000 genomes]
rs13226923	0.81[ASN][1000 genomes]
rs13228123	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs13237811	0.84[ASN][1000 genomes]
rs1464787	0.82[ASN][1000 genomes]
rs1464788	0.82[ASN][1000 genomes]
rs1474368	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1476104	0.80[EUR][1000 genomes]
rs1476105	0.81[EUR][1000 genomes]
rs1524518	0.81[ASN][1000 genomes]
rs1558413	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17365333	0.80[EUR][1000 genomes]
rs17365375	0.80[EUR][1000 genomes]
rs17462837	0.81[EUR][1000 genomes]
rs1880368	0.81[ASN][1000 genomes]
rs2159678	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2280613	0.81[ASN][1000 genomes]
rs2866075	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2866277	0.81[ASN][1000 genomes]
rs28770244	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34519726	0.81[EUR][1000 genomes]
rs34617709	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35222730	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35303761	0.81[ASN][1000 genomes]
rs35317642	0.81[EUR][1000 genomes]
rs35696945	0.84[ASN][1000 genomes]
rs3846984	0.81[ASN][1000 genomes]
rs6415223	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6460536	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6460537	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6460541	0.81[ASN][1000 genomes]
rs6460542	0.81[ASN][1000 genomes]
rs6460543	0.81[ASN][1000 genomes]
rs6651055	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6944725	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6949651	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6950485	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6950647	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6951921	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6953170	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6954715	0.81[ASN][1000 genomes]
rs6954837	0.81[ASN][1000 genomes]
rs6957126	0.87[EUR][1000 genomes]
rs6961164	0.85[ASN][1000 genomes]
rs6961345	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6963904	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6966036	0.81[ASN][1000 genomes]
rs6974687	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6975279	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6979355	0.81[ASN][1000 genomes]
rs73442405	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs735060	0.80[EUR][1000 genomes]
rs7779010	0.81[ASN][1000 genomes]
rs7780640	0.81[EUR][1000 genomes]
rs7784584	0.94[ASN][1000 genomes]
rs7786073	0.81[ASN][1000 genomes]
rs7790729	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7790934	0.82[AMR][1000 genomes]
rs7791101	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7792775	0.81[ASN][1000 genomes]
rs7794623	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7795152	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7796080	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7796973	0.82[ASN][1000 genomes]
rs7797340	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7805470	0.94[ASN][1000 genomes]
rs7809303	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7809934	0.85[ASN][1000 genomes]
rs870920	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs873835	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs877687	0.81[ASN][1000 genomes]
rs9638268	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9638582	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1018289	chr7:69383450-69650885	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538922	chr7:69383450-69650885	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2758119	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv2759536	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1020488	chr7:69465268-69671126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv916345	chr7:69520612-69784809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69565400-69585800	Weak transcription	Fetal Brain Female	brain
2	chr7:69576200-69585400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:69578800-69591800	Weak transcription	Ovary	ovary
4	chr7:69580200-69585600	Weak transcription	Adipose Nuclei	Adipose
5	chr7:69580600-69585400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:69581200-69585600	Weak transcription	Fetal Muscle Leg	muscle
7	chr7:69581400-69585800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:69581600-69585600	Weak transcription	Dnd41	blood
9	chr7:69581600-69585800	Weak transcription	Left Ventricle	heart
10	chr7:69582000-69585800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:69582000-69597600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:69582600-69585600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr7:69582600-69585600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:69582600-69586000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr7:69583000-69585000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:69583000-69585000	Strong transcription	Primary B cells from peripheral blood	blood
17	chr7:69583200-69586800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:69583800-69585600	Strong transcription	Primary B cells from cord blood	blood
19	chr7:69583800-69585600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr7:69583800-69585600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr7:69584000-69585400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:69584400-69585800	Weak transcription	Fetal Lung	lung
23	chr7:69584400-69586000	Weak transcription	Brain Substantia Nigra	brain
24	chr7:69584600-69587600	Weak transcription	Fetal Intestine Small	intestine
25	chr7:69584600-69587800	Weak transcription	Fetal Stomach	stomach
26	chr7:69584800-69586600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:69584800-69586800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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