Variant report

Variant	rs10279392
Chromosome Location	chr7:69567938-69567939
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:69567637..69569210-chr7:69569359..69572320,2	K562	blood:

Extended variants
information (count: 97 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10229027	0.80[ASN][1000 genomes]
rs10229155	0.82[ASN][1000 genomes]
rs10234205	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10235487	0.83[AMR][1000 genomes]
rs10235781	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10235860	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10246631	0.80[ASN][1000 genomes]
rs10251306	0.91[ASN][1000 genomes]
rs10256186	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10257549	0.83[EUR][1000 genomes]
rs10268235	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10270616	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10273270	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1035010	0.83[AMR][1000 genomes]
rs1035013	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10452738	0.84[EUR][1000 genomes]
rs10499812	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11761141	0.87[ASN][1000 genomes]
rs11767997	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11978431	0.83[EUR][1000 genomes]
rs12669794	0.81[EUR][1000 genomes]
rs12698822	0.85[ASN][1000 genomes]
rs12698830	0.84[EUR][1000 genomes]
rs12698842	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12698843	0.80[EUR][1000 genomes]
rs12698847	0.81[EUR][1000 genomes]
rs12698849	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12698850	0.81[EUR][1000 genomes]
rs12698853	0.81[EUR][1000 genomes]
rs12698855	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12698866	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12698877	0.86[ASN][1000 genomes]
rs12698899	0.80[ASN][1000 genomes]
rs13228123	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs1464786	0.80[ASN][1000 genomes]
rs1476104	0.80[EUR][1000 genomes]
rs1476105	0.81[EUR][1000 genomes]
rs1558413	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17365333	0.80[EUR][1000 genomes]
rs17365375	0.80[EUR][1000 genomes]
rs17462837	0.81[EUR][1000 genomes]
rs2159678	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2866075	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28770244	0.82[EUR][1000 genomes]
rs34519726	0.81[EUR][1000 genomes]
rs34617709	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35222730	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35317642	0.81[EUR][1000 genomes]
rs6415223	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6460536	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6460537	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6943555	0.80[ASN][1000 genomes]
rs6944725	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6949651	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6950485	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6950647	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6951921	0.83[EUR][1000 genomes]
rs6953170	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6957126	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6958981	0.85[ASN][1000 genomes]
rs6962999	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6963904	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6969375	0.85[ASN][1000 genomes]
rs6974687	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73442405	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs735060	0.80[EUR][1000 genomes]
rs7780640	0.81[EUR][1000 genomes]
rs7781035	0.88[ASN][1000 genomes]
rs7784584	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7788024	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7790729	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7790934	0.88[ASN][1000 genomes]
rs7791101	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7792964	0.83[ASN][1000 genomes]
rs7794623	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7795152	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7797340	0.82[EUR][1000 genomes]
rs7808540	0.88[ASN][1000 genomes]
rs7809303	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9638268	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9638582	0.81[EUR][1000 genomes]
rs9918496	0.80[ASN][1000 genomes]
rs9918544	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1018289	chr7:69383450-69650885	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv538922	chr7:69383450-69650885	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv2758119	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv2759536	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1020488	chr7:69465268-69671126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1034817	chr7:69507871-69578892	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv538926	chr7:69507871-69578892	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1028975	chr7:69513266-69578892	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv916345	chr7:69520612-69784809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10279392	VKORC1L1	cis	parietal	SCAN
rs10279392	AUTS2	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69564600-69569200	Weak transcription	Fetal Heart	heart
2	chr7:69565400-69570000	Weak transcription	Fetal Lung	lung
3	chr7:69565400-69585800	Weak transcription	Fetal Brain Female	brain

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