Variant report

Variant	rs12698847
Chromosome Location	chr7:69552829-69552830
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 138 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs1008379	0.80[ASN][1000 genomes]
rs10085696	0.81[ASN][1000 genomes]
rs1014059	0.83[ASN][1000 genomes]
rs10235860	0.81[EUR][1000 genomes]
rs10262697	0.81[ASN][1000 genomes]
rs10268235	0.82[EUR][1000 genomes]
rs10270616	0.80[EUR][1000 genomes]
rs10279392	0.81[EUR][1000 genomes]
rs10499813	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12112758	0.87[AFR][1000 genomes]
rs12113555	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12155144	0.81[ASN][1000 genomes]
rs12667561	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12669794	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12673575	0.86[AFR][1000 genomes]
rs12698812	0.81[ASN][1000 genomes]
rs12698814	0.81[ASN][1000 genomes]
rs12698815	0.85[ASN][1000 genomes]
rs12698820	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12698826	0.83[AMR][1000 genomes]
rs12698835	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12698838	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12698841	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12698842	0.81[EUR][1000 genomes]
rs12698843	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12698846	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12698849	0.81[EUR][1000 genomes]
rs12698850	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12698851	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12698853	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12698856	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12698857	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12698859	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12698861	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12698862	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12698864	0.88[AFR][1000 genomes]
rs12698865	0.86[AFR][1000 genomes]
rs12698867	0.86[AFR][1000 genomes]
rs12698869	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12698873	0.87[AFR][1000 genomes]
rs12698875	0.95[ASN][1000 genomes]
rs12698879	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12698880	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12698882	0.81[AFR][1000 genomes]
rs12698883	0.82[AFR][1000 genomes]
rs12698884	0.87[ASN][1000 genomes]
rs12698886	0.85[ASN][1000 genomes]
rs12698892	0.81[ASN][1000 genomes]
rs12698893	0.81[ASN][1000 genomes]
rs13228464	0.80[ASN][1000 genomes]
rs13229395	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13229686	0.82[AFR][1000 genomes]
rs13231497	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13236841	0.87[ASN][1000 genomes]
rs13238017	0.81[AFR][1000 genomes]
rs13242485	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13247796	0.91[ASN][1000 genomes]
rs1404275	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1476104	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1476105	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17365011	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17365333	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17365375	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17458097	0.84[ASN][1000 genomes]
rs17462837	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17604001	0.88[ASN][1000 genomes]
rs17762460	0.82[AFR][1000 genomes]
rs1880369	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2030705	0.82[AFR][1000 genomes]
rs2030706	0.82[AFR][1000 genomes]
rs2159679	0.80[ASN][1000 genomes]
rs2866275	0.82[AFR][1000 genomes]
rs34519726	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35062112	0.90[ASN][1000 genomes]
rs35317642	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4318956	0.93[AFR][1000 genomes]
rs4475377	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4623296	0.92[AFR][1000 genomes]
rs58849135	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6460536	0.81[EUR][1000 genomes]
rs6460539	0.92[AFR][1000 genomes]
rs67847242	0.88[AFR][1000 genomes]
rs6943610	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6943630	0.95[ASN][1000 genomes]
rs6946066	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6948676	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6951909	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6953170	0.81[EUR][1000 genomes]
rs6962999	0.81[EUR][1000 genomes]
rs6964139	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6970670	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6971237	0.81[AFR][1000 genomes]
rs6978841	0.81[ASN][1000 genomes]
rs6978919	0.85[ASN][1000 genomes]
rs735060	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs763759	0.84[ASN][1000 genomes]
rs7779308	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7780640	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7782771	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7783039	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7783592	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7783748	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7790084	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7791101	0.81[EUR][1000 genomes]
rs7791954	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7796592	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7799192	0.87[AFR][1000 genomes]
rs7800317	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7800759	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7803814	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7806363	0.82[AFR][1000 genomes]
rs7807263	0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7808588	0.90[ASN][1000 genomes]
rs7808773	0.80[ASN][1000 genomes]
rs870919	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs877188	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs917717	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9638268	0.81[EUR][1000 genomes]
rs9638575	0.85[ASN][1000 genomes]
rs9638582	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9691023	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1018289	chr7:69383450-69650885	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv538922	chr7:69383450-69650885	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv2758119	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv2759536	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv607429	chr7:69430748-69553093	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1020488	chr7:69465268-69671126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1022932	chr7:69496659-69564369	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv538925	chr7:69496659-69564369	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv1034817	chr7:69507871-69578892	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv538926	chr7:69507871-69578892	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv1028975	chr7:69513266-69578892	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv916345	chr7:69520612-69784809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69545200-69562200	Weak transcription	Primary B cells from cord blood	blood
2	chr7:69550800-69558600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:69551600-69558000	Weak transcription	Fetal Intestine Small	intestine
4	chr7:69552000-69557400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:69552200-69556400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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