Variant report

Variant	rs7800317
Chromosome Location	chr7:69469874-69469875
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:69423156..69425237-chr7:69469774..69471942,2	MCF-7	breast:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs12112758	0.92[ASN][1000 genomes]
rs12667561	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12669794	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12673575	0.92[ASN][1000 genomes]
rs12698815	0.80[AMR][1000 genomes]
rs12698820	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12698826	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12698835	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12698838	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12698841	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12698843	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12698846	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12698847	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12698850	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12698851	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12698853	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12698857	0.89[YRI][hapmap]
rs12698861	0.90[ASN][1000 genomes]
rs12698864	0.88[ASN][1000 genomes]
rs12698865	0.92[ASN][1000 genomes]
rs12698867	0.92[ASN][1000 genomes]
rs12698873	0.90[ASN][1000 genomes]
rs12698882	0.85[ASN][1000 genomes]
rs12698883	0.85[ASN][1000 genomes]
rs13228464	0.81[AMR][1000 genomes]
rs13229395	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13229686	0.83[ASN][1000 genomes]
rs13231497	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13236841	0.80[AMR][1000 genomes]
rs13238017	0.85[ASN][1000 genomes]
rs13242485	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13340492	0.83[ASN][1000 genomes]
rs1476104	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1476105	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17365011	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17365333	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17365375	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17462837	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17762460	0.85[ASN][1000 genomes]
rs2030705	0.84[ASN][1000 genomes]
rs2030706	0.85[ASN][1000 genomes]
rs2866275	0.85[ASN][1000 genomes]
rs34519726	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35317642	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4318956	0.90[ASN][1000 genomes]
rs4623296	0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs58849135	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6460539	0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs67847242	0.92[ASN][1000 genomes]
rs6943610	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6945241	0.82[ASN][1000 genomes]
rs6951909	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6953075	0.83[ASN][1000 genomes]
rs6963101	0.82[AMR][1000 genomes]
rs6970670	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6971237	0.85[ASN][1000 genomes]
rs6975814	0.83[ASN][1000 genomes]
rs735060	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7779308	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7780640	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7782771	0.80[AFR][1000 genomes]
rs7783039	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7783748	0.92[ASN][1000 genomes]
rs7790084	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7796592	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7799192	0.92[ASN][1000 genomes]
rs7800759	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7806363	0.85[ASN][1000 genomes]
rs917717	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9638582	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9647931	0.82[ASN][1000 genomes]
rs9647932	0.82[ASN][1000 genomes]
rs9691023	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv492242	chr7:69330737-69520566	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1018289	chr7:69383450-69650885	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv538922	chr7:69383450-69650885	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1034281	chr7:69403828-69548378	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv538923	chr7:69403828-69548378	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1034182	chr7:69406172-69529294	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv538924	chr7:69406172-69529294	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv2758119	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv2759536	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv607429	chr7:69430748-69553093	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv1028705	chr7:69453983-69524628	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv1020488	chr7:69465268-69671126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv3359857	chr7:69467266-69470789	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3356438	chr7:69467816-69469964	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69455800-69470400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:69460200-69470200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:69460200-69471600	Weak transcription	Fetal Intestine Small	intestine
4	chr7:69461400-69471000	Weak transcription	Right Atrium	heart
5	chr7:69461400-69471400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr7:69461400-69471600	Weak transcription	Right Ventricle	heart
7	chr7:69461600-69474000	Weak transcription	Psoas Muscle	Psoas
8	chr7:69462200-69470200	Weak transcription	Colon Smooth Muscle	Colon
9	chr7:69463200-69470000	Weak transcription	Fetal Stomach	stomach
10	chr7:69465200-69470200	Weak transcription	Fetal Heart	heart
11	chr7:69466400-69470000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr7:69466400-69470200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr7:69466400-69471400	Weak transcription	Brain Hippocampus Middle	brain
14	chr7:69466400-69475200	Weak transcription	Left Ventricle	heart
15	chr7:69466600-69470000	Weak transcription	GM12878-XiMat	blood
16	chr7:69466600-69470400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr7:69469400-69470000	Enhancers	Dnd41	blood
18	chr7:69469400-69470800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:69469400-69471000	Enhancers	Thymus	Thymus
20	chr7:69469400-69472000	Enhancers	Primary B cells from peripheral blood	blood
21	chr7:69469600-69470400	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr7:69469600-69472200	Enhancers	Fetal Thymus	thymus
23	chr7:69469800-69471000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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