Variant report

Variant	rs13247796
Chromosome Location	chr7:69611478-69611479
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10499813	0.92[ASN][1000 genomes]
rs12113555	0.92[ASN][1000 genomes]
rs12698815	0.81[ASN][1000 genomes]
rs12698820	0.85[ASN][1000 genomes]
rs12698838	0.90[ASN][1000 genomes]
rs12698841	0.90[ASN][1000 genomes]
rs12698843	0.91[ASN][1000 genomes]
rs12698846	0.91[ASN][1000 genomes]
rs12698847	0.91[ASN][1000 genomes]
rs12698850	0.89[ASN][1000 genomes]
rs12698853	0.91[ASN][1000 genomes]
rs12698856	0.92[ASN][1000 genomes]
rs12698857	0.92[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs12698859	0.89[ASN][1000 genomes]
rs12698860	0.81[AMR][1000 genomes]
rs12698862	0.90[ASN][1000 genomes]
rs12698869	0.92[ASN][1000 genomes]
rs12698875	0.90[ASN][1000 genomes]
rs12698879	0.86[ASN][1000 genomes]
rs12698880	0.86[ASN][1000 genomes]
rs12698884	0.83[ASN][1000 genomes]
rs12698886	0.81[ASN][1000 genomes]
rs13231497	0.90[ASN][1000 genomes]
rs13236841	0.81[ASN][1000 genomes]
rs13242485	0.90[ASN][1000 genomes]
rs1404275	0.86[ASN][1000 genomes]
rs1476104	0.91[ASN][1000 genomes]
rs17365011	0.95[ASN][1000 genomes]
rs17365333	0.91[ASN][1000 genomes]
rs17604001	0.84[ASN][1000 genomes]
rs1880369	0.92[ASN][1000 genomes]
rs35062112	0.86[ASN][1000 genomes]
rs4475377	0.86[ASN][1000 genomes]
rs6943610	0.91[ASN][1000 genomes]
rs6943630	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6946066	0.92[ASN][1000 genomes]
rs6948676	0.88[ASN][1000 genomes]
rs6964139	0.90[ASN][1000 genomes]
rs6978919	0.81[ASN][1000 genomes]
rs735060	0.91[ASN][1000 genomes]
rs7779308	0.90[ASN][1000 genomes]
rs7782771	0.92[ASN][1000 genomes]
rs7783039	0.87[ASN][1000 genomes]
rs7783592	0.92[ASN][1000 genomes]
rs7790084	0.91[ASN][1000 genomes]
rs7791954	0.92[ASN][1000 genomes]
rs7796592	0.97[ASN][1000 genomes]
rs7800759	0.83[ASN][1000 genomes]
rs7803814	0.92[ASN][1000 genomes]
rs7807263	0.92[ASN][1000 genomes]
rs7808588	0.86[ASN][1000 genomes]
rs870919	0.88[ASN][1000 genomes]
rs9638575	0.81[ASN][1000 genomes]
rs9638582	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1018289	chr7:69383450-69650885	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538922	chr7:69383450-69650885	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1020488	chr7:69465268-69671126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv916345	chr7:69520612-69784809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69598800-69613400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:69599200-69616200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:69600000-69618200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:69600000-69631000	Weak transcription	Primary B cells from cord blood	blood
5	chr7:69603400-69625600	Weak transcription	Fetal Brain Male	brain
6	chr7:69610200-69626400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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