Variant report

Variant	rs2866075
Chromosome Location	chr7:69486005-69486006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10234205	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10235487	0.83[AMR][1000 genomes]
rs10235860	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10251306	0.86[ASN][1000 genomes]
rs10256186	0.87[ASN][1000 genomes]
rs10257549	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10268235	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10270616	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10273270	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10279392	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1035010	0.81[AMR][1000 genomes]
rs1035013	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10452738	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10499812	0.87[ASN][1000 genomes]
rs11761141	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11767997	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11978431	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12698822	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12698825	0.83[AMR][1000 genomes]
rs12698830	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12698842	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12698849	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12698866	0.87[ASN][1000 genomes]
rs12698877	0.81[ASN][1000 genomes]
rs13226538	0.83[AMR][1000 genomes]
rs13237811	0.80[AMR][1000 genomes]
rs1558413	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2159678	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28770244	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34617709	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35222730	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6415223	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6460536	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6944725	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6949651	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6950485	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6951921	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6953170	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6957126	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6958981	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6961164	0.85[AMR][1000 genomes]
rs6962999	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6963904	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6974687	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73442405	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7781035	0.82[ASN][1000 genomes]
rs7788024	0.82[ASN][1000 genomes]
rs7790934	0.82[ASN][1000 genomes]
rs7791101	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7794623	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7795152	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7797340	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7801117	0.93[YRI][hapmap]
rs7808540	0.82[ASN][1000 genomes]
rs7809303	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7809934	0.83[AMR][1000 genomes]
rs9638268	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv492242	chr7:69330737-69520566	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1018289	chr7:69383450-69650885	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv538922	chr7:69383450-69650885	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1034281	chr7:69403828-69548378	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv538923	chr7:69403828-69548378	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1034182	chr7:69406172-69529294	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv538924	chr7:69406172-69529294	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv2758119	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv2759536	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv607429	chr7:69430748-69553093	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv1028705	chr7:69453983-69524628	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv1020488	chr7:69465268-69671126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69477200-69490400	Weak transcription	Left Ventricle	heart
2	chr7:69477200-69507600	Weak transcription	Right Atrium	heart
3	chr7:69478600-69491000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:69479800-69494000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr7:69480200-69486400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr7:69481200-69486400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr7:69481200-69486400	Weak transcription	Fetal Brain Male	brain
8	chr7:69481400-69486400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:69481400-69486400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr7:69481600-69486400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr7:69481600-69486600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:69481600-69488400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:69482000-69486600	Weak transcription	Fetal Intestine Small	intestine
14	chr7:69482400-69486400	Weak transcription	Fetal Heart	heart
15	chr7:69482600-69486400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:69482600-69486400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr7:69482600-69488000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr7:69482600-69490400	Weak transcription	Fetal Thymus	thymus
19	chr7:69482600-69491000	Weak transcription	Psoas Muscle	Psoas
20	chr7:69482800-69486400	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr7:69482800-69486400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:69482800-69486400	Weak transcription	Brain Germinal Matrix	brain
23	chr7:69482800-69486400	Weak transcription	Fetal Brain Female	brain
24	chr7:69482800-69489600	Weak transcription	Fetal Stomach	stomach
25	chr7:69482800-69490200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr7:69483400-69488800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr7:69483400-69495600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links