Variant report

Variant	rs12112638
Chromosome Location	chr7:69735251-69735252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10229027	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10229155	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10234614	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10234844	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10234892	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10235487	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10235781	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10237530	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10237685	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10244275	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10246631	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10251306	0.86[EUR][1000 genomes]
rs10251416	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10254839	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10256062	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10256186	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10258298	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10258962	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10268235	0.81[ASN][1000 genomes]
rs10268924	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10277411	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10280622	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1035010	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10486874	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10486875	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10499812	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10950199	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11766329	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11767997	0.82[ASN][1000 genomes]
rs12155138	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12155144	0.81[AMR][1000 genomes]
rs12374873	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12698855	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12698866	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12698871	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12698877	0.81[AMR][1000 genomes]
rs12698895	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12698896	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12698897	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12698899	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13221252	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13226923	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13228123	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1357759	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1404274	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1464786	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1464787	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1464788	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1474368	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1524518	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1880368	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2103132	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2222544	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2280613	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2280614	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2866277	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35303761	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3846984	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6460536	0.85[ASN][1000 genomes]
rs6460537	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6460541	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6460542	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6460543	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6651055	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6943555	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6945241	0.81[AMR][1000 genomes]
rs6949651	0.81[ASN][1000 genomes]
rs6950485	0.82[ASN][1000 genomes]
rs6950647	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6953170	0.83[ASN][1000 genomes]
rs6953344	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6954715	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6954837	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6957740	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6961345	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6962999	0.85[ASN][1000 genomes]
rs6967697	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6967986	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6969375	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6975279	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6976581	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6978919	0.81[AMR][1000 genomes]
rs7781035	0.84[AMR][1000 genomes]
rs7781401	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7781727	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7784584	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7787612	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7788024	0.87[AMR][1000 genomes]
rs7790729	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7790934	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7791101	0.81[ASN][1000 genomes]
rs7792775	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7792964	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7794623	0.84[ASN][1000 genomes]
rs7796080	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7798991	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7799308	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7805470	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7808540	0.88[AMR][1000 genomes]
rs8180850	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs870920	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs873835	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9918496	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9918544	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv916345	chr7:69520612-69784809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv869342	chr7:69671501-69958576	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv607431	chr7:69699074-69828729	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv888337	chr7:69707076-69952187	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv529669	chr7:69709373-69974708	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69729800-69736000	Weak transcription	Ovary	ovary
2	chr7:69731200-69736000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:69733000-69736800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:69734400-69735400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:69734400-69735600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:69734600-69735600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:69734600-69735800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:69734600-69737800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:69734800-69737800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:69735200-69735800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr7:69735200-69736000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr7:69735200-69736000	Enhancers	H1 Cell Line	embryonic stem cell
13	chr7:69735200-69736200	Enhancers	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links