Variant report

Variant	rs2851509
Chromosome Location	chr7:69080438-69080439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10085775	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1014382	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10237145	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10241485	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11765886	0.83[ASN][1000 genomes]
rs12333508	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12531914	0.83[ASN][1000 genomes]
rs13232095	0.81[AMR][1000 genomes]
rs1468588	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2058395	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs210598	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs210600	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs210603	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2253711	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2533432	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2533434	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2533440	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2533446	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2533447	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2533449	0.84[EUR][1000 genomes]
rs2533456	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2851485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851488	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2851500	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851504	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2851512	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851517	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41851	0.83[ASN][1000 genomes]
rs41855	0.83[ASN][1000 genomes]
rs41858	0.83[ASN][1000 genomes]
rs4717521	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs521259	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs563740	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs588004	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60739014	0.83[ASN][1000 genomes]
rs608796	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs611052	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs611573	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs622767	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs624626	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs674865	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6955815	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6957302	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6959766	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6974004	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs720056	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7781403	0.83[ASN][1000 genomes]
rs7793984	0.85[ASN][1000 genomes]
rs917616	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9692258	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs981291	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs988282	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023885	chr7:68894896-69158290	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538915	chr7:68894896-69158290	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv428169	chr7:69021482-69196743	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69066800-69084600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:69075400-69084600	Weak transcription	Fetal Kidney	kidney
3	chr7:69076200-69086800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr7:69076400-69080800	Weak transcription	Ovary	ovary
5	chr7:69076400-69082200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr7:69076400-69084600	Weak transcription	Fetal Lung	lung
7	chr7:69076400-69087600	Weak transcription	Adipose Nuclei	Adipose
8	chr7:69076400-69095400	Weak transcription	Fetal Stomach	stomach
9	chr7:69077600-69081400	Enhancers	Brain Cingulate Gyrus	brain
10	chr7:69078000-69080600	Weak transcription	Brain Angular Gyrus	brain
11	chr7:69078200-69084000	Weak transcription	Fetal Brain Male	brain
12	chr7:69079200-69087200	Weak transcription	Fetal Heart	heart
13	chr7:69079400-69082000	Weak transcription	Fetal Brain Female	brain
14	chr7:69079600-69083200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr7:69079800-69080800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:69079800-69080800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:69079800-69080800	Weak transcription	Brain Germinal Matrix	brain
18	chr7:69079800-69084200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr7:69079800-69085600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr7:69079800-69087200	Weak transcription	Brain Anterior Caudate	brain
21	chr7:69079800-69093600	Weak transcription	Brain Substantia Nigra	brain
22	chr7:69080000-69095200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr7:69080200-69082000	Weak transcription	Brain Hippocampus Middle	brain
24	chr7:69080200-69082800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr7:69080200-69084200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr7:69080200-69084800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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