Variant report

Variant	rs10141251
Chromosome Location	chr14:70722878-70722879
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70519745..70521992-chr14:70721079..70723653,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1000619	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10137313	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10144989	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10145919	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10147630	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11158843	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11158844	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11623847	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11846947	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11851232	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12882693	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12888540	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1467688	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1559714	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1571376	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1958186	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2182973	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28547335	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34658799	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35406991	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35814863	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899337	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4899342	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4902797	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902799	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4902801	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61978252	0.84[ASN][1000 genomes]
rs61979492	0.81[ASN][1000 genomes]
rs61979503	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6573935	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6650511	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7141105	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7141597	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7141710	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7154186	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7155673	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs74062858	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8003306	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8015463	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8017251	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017375	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv826972	chr14:70717268-70726035	Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70721000-70724000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr14:70721600-70724400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr14:70721600-70726600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:70722000-70724400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:70722200-70726000	Weak transcription	HepG2	liver
6	chr14:70722600-70723200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr14:70722600-70723400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr14:70722600-70723400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr14:70722600-70723400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:70722600-70723600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr14:70722800-70723200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr14:70722800-70723400	Weak transcription	H1 Cell Line	embryonic stem cell

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