Variant report

Variant	rs6650511
Chromosome Location	chr14:70706584-70706585
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1000619	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10137313	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10141251	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10144989	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10145919	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10147630	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11158843	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11158844	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11623847	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11846947	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11851232	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12882693	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12888540	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1467688	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1559714	0.86[EUR][1000 genomes]
rs1571376	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1958186	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2182973	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28547335	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34658799	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35406991	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35814863	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4899337	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4899342	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902797	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4902799	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4902801	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61979503	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6573935	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7141105	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7141597	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7141710	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7154186	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7155673	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74062858	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8003306	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8015463	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8017251	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8017375	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv983840	chr14:70696676-70714926	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70697400-70719400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:70701800-70721200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:70706000-70706800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:70706200-70706600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr14:70706200-70706600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
6	chr14:70706200-70706600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr14:70706200-70706800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr14:70706200-70707000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr14:70706200-70707000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr14:70706200-70707200	Enhancers	Primary B cells from peripheral blood	blood
11	chr14:70706400-70706800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr14:70706400-70707000	Enhancers	H1 Cell Line	embryonic stem cell

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