Variant report

Variant	rs10147630
Chromosome Location	chr14:70724814-70724815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:70514161..70515859-chr14:70723794..70725987,2	MCF-7	breast:
2	chr14:70553438..70554419-chr14:70723857..70725057,7	MCF-7	breast:
3	chr14:70563314..70564224-chr14:70724024..70724835,3	MCF-7	breast:
4	chr14:70717254..70719398-chr14:70724325..70725965,2	MCF-7	breast:
5	chr14:70563059..70563930-chr14:70724005..70724836,3	MCF-7	breast:
6	chr14:70192465..70194929-chr14:70723600..70725967,2	MCF-7	breast:
7	chr14:70285530..70286121-chr14:70724141..70724832,2	MCF-7	breast:
8	chr14:70512608..70513510-chr14:70723957..70724907,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000100650	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1000619	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10137313	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10141251	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10144989	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10145919	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11158843	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158844	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11623847	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11846947	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11851232	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12882693	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12888540	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1467688	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1559714	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1571376	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1958186	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2182973	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28547335	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34658799	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35406991	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35814863	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4899337	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4899342	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4902797	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4902799	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4902801	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61978252	0.82[ASN][1000 genomes]
rs61979503	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6573935	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6650511	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7141105	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7141597	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7141710	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7154186	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7155673	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs74062858	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8003306	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8015463	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8017251	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8017375	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv826972	chr14:70717268-70726035	Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70721600-70726600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:70722200-70726000	Weak transcription	HepG2	liver
3	chr14:70723800-70725000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr14:70723800-70744200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:70724000-70725800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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