Variant report

Variant	rs10141903
Chromosome Location	chr14:82018202-82018203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10135007	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10137690	0.82[ASN][1000 genomes]
rs10151312	0.84[ASN][1000 genomes]
rs11159502	0.95[CEU][hapmap];0.80[CHB][hapmap];0.84[GIH][hapmap];0.82[MEX][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs11159503	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11847098	0.95[CEU][hapmap];0.80[CHB][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes]
rs11847181	0.85[ASN][1000 genomes]
rs12890754	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12893669	0.89[EUR][1000 genomes]
rs12897062	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1885598	0.86[LWK][hapmap]
rs1885599	0.86[CEU][hapmap]
rs1951605	0.95[CEU][hapmap];0.80[CHB][hapmap];0.89[EUR][1000 genomes]
rs1951609	0.91[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1951613	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2025214	0.95[CEU][hapmap];0.80[CHB][hapmap];0.84[GIH][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2146243	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2236179	0.86[LWK][hapmap]
rs2371805	0.86[EUR][1000 genomes]
rs28455614	0.89[EUR][1000 genomes]
rs4903983	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs4903984	0.86[CEU][hapmap]
rs4903985	0.81[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7140301	0.84[ASN][1000 genomes]
rs7150294	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7153100	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7401055	0.92[EUR][1000 genomes]
rs8005622	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8007402	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8011278	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047694	chr14:81831147-82534026	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv542145	chr14:81831147-82534026	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv902120	chr14:81953242-82067555	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv565299	chr14:81983027-82586324	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:82017600-82018400	Enhancers	NHEK	skin
2	chr14:82017600-82020200	Weak transcription	GM12878-XiMat	blood
3	chr14:82018200-82018400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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