Variant report

Variant	rs11159503
Chromosome Location	chr14:82030147-82030148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10135007	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10137690	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10141903	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10151312	1.00[ASN][1000 genomes]
rs11159502	0.85[CEU][hapmap]
rs11847098	0.85[CEU][hapmap]
rs11847181	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1885599	0.95[CEU][hapmap]
rs1951605	0.85[CEU][hapmap]
rs1951609	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1951613	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2025214	0.85[CEU][hapmap]
rs2146242	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2146243	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2371805	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4584759	0.88[EUR][1000 genomes]
rs4903983	0.83[CEU][hapmap]
rs4903984	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs4903985	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7140301	1.00[ASN][1000 genomes]
rs7150294	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7150676	0.83[EUR][1000 genomes]
rs7153100	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8005622	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8007402	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8011278	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8017948	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047694	chr14:81831147-82534026	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv542145	chr14:81831147-82534026	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv902120	chr14:81953242-82067555	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv565299	chr14:81983027-82586324	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:82027400-82030200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr14:82028000-82031600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr14:82028200-82030400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:82029200-82030600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr14:82029400-82030200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr14:82029400-82031800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr14:82030000-82032800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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