Variant report

Variant	rs10142772
Chromosome Location	chr14:70978611-70978612
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10129764	0.94[AMR][1000 genomes]
rs10129815	1.00[AMR][1000 genomes]
rs10139100	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10147036	1.00[AMR][1000 genomes]
rs1892284	1.00[AMR][1000 genomes]
rs1953801	0.94[AMR][1000 genomes]
rs28781359	1.00[AMR][1000 genomes]
rs28831768	0.94[AMR][1000 genomes]
rs7160839	0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv565042	chr14:70951234-71011734	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1050615	chr14:70954149-71013235	Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2763072	chr14:70954149-71013247	Strong transcription ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70958600-70989000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr14:70958800-70993800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr14:70965200-70982000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr14:70968600-70989400	Weak transcription	Pancreas	Pancrea
5	chr14:70973400-70985200	Weak transcription	Left Ventricle	heart
6	chr14:70975800-70990000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr14:70978200-70980600	Weak transcription	Small Intestine	intestine
8	chr14:70978200-70986600	Weak transcription	Liver	Liver
9	chr14:70978400-70978800	ZNF genes & repeats	Ovary	ovary
10	chr14:70978600-70985000	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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