Variant report

Variant	rs10142935
Chromosome Location	chr14:32813416-32813417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32801679..32804080-chr14:32811528..32814330,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10130528	1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10130788	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10133556	1.00[AMR][1000 genomes]
rs10133735	1.00[AMR][1000 genomes]
rs10136506	1.00[ASN][1000 genomes]
rs10467754	1.00[EUR][1000 genomes]
rs17098745	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17098811	1.00[ASN][1000 genomes]
rs17098871	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28360933	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3759780	1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs3784169	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3784170	1.00[ASN][1000 genomes]
rs58521330	1.00[ASN][1000 genomes]
rs73256770	1.00[EUR][1000 genomes]
rs73256773	1.00[EUR][1000 genomes]
rs73256780	1.00[EUR][1000 genomes]
rs9322891	1.00[ASN][1000 genomes]
rs9322895	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1798445	chr14:32808361-32813639	Enhancers Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32797200-32831600	Weak transcription	Right Atrium	heart
2	chr14:32799400-32814600	Weak transcription	Left Ventricle	heart
3	chr14:32802600-32819000	Weak transcription	Fetal Brain Male	brain
4	chr14:32803200-32814000	Weak transcription	Fetal Intestine Small	intestine
5	chr14:32803200-32821600	Weak transcription	Fetal Brain Female	brain
6	chr14:32807200-32814600	Weak transcription	Aorta	Aorta
7	chr14:32809400-32814400	Weak transcription	HSMMtube	muscle
8	chr14:32809600-32815200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr14:32809800-32815600	Enhancers	NHEK	skin
10	chr14:32810000-32815600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr14:32810400-32815200	Enhancers	HMEC	breast
12	chr14:32810800-32813800	Enhancers	Brain Anterior Caudate	brain
13	chr14:32811000-32815000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr14:32811000-32815200	Enhancers	Brain Angular Gyrus	brain
15	chr14:32811000-32815400	Enhancers	Brain Hippocampus Middle	brain
16	chr14:32811400-32815400	Enhancers	Brain Cingulate Gyrus	brain
17	chr14:32811800-32814400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr14:32811800-32814600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr14:32812000-32813600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr14:32812000-32814200	Weak transcription	NHDF-Ad	bronchial
21	chr14:32812200-32814400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr14:32812200-32814600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr14:32812600-32814200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr14:32812600-32814200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr14:32812600-32814400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr14:32812600-32814400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr14:32812600-32814400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr14:32813200-32813600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr14:32813200-32813600	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr14:32813200-32813600	Enhancers	Esophagus	oesophagus
31	chr14:32813200-32813800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr14:32813200-32814000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr14:32813200-32814000	Strong transcription	Brain Germinal Matrix	brain
34	chr14:32813200-32814000	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr14:32813400-32814400	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr14:32813400-32814400	Weak transcription	Brain Substantia Nigra	brain
37	chr14:32813400-32814800	Weak transcription	Fetal Intestine Large	intestine
38	chr14:32813400-32815200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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