Variant report

Variant	rs3759780
Chromosome Location	chr14:32797488-32797489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RFX5	chr14:32797327-32801016	SK-N-SH	brain:	n/a	chr14:32798461-32798476 chr14:32798464-32798478 chr14:32798463-32798478 chr14:32798461-32798476 chr14:32798466-32798475 chr14:32798461-32798476 chr14:32798460-32798477

Variant related genes	Relation type
AKAP6	TF binding region

rs_ID	r²[population]
rs10130528	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10130788	1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10133184	0.92[ASN][1000 genomes]
rs10136506	0.82[ASN][1000 genomes]
rs10142935	1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17098745	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17098811	0.82[ASN][1000 genomes]
rs17098871	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs28360933	0.82[ASN][1000 genomes]
rs35718058	1.00[AMR][1000 genomes]
rs3784169	0.82[ASN][1000 genomes]
rs3784170	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs56744916	1.00[AMR][1000 genomes]
rs58521330	0.82[ASN][1000 genomes]
rs61275932	0.92[ASN][1000 genomes]
rs9322891	0.82[ASN][1000 genomes]

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32788800-32811800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr14:32790800-32799800	Weak transcription	Fetal Heart	heart
3	chr14:32796400-32797800	Enhancers	HSMMtube	muscle
4	chr14:32796400-32798000	Enhancers	K562	blood
5	chr14:32796600-32797800	Enhancers	Brain Germinal Matrix	brain
6	chr14:32796600-32802400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:32796800-32797600	Enhancers	Brain Cingulate Gyrus	brain
8	chr14:32797000-32797600	Enhancers	Brain Anterior Caudate	brain
9	chr14:32797000-32797600	Enhancers	Brain Hippocampus Middle	brain
10	chr14:32797000-32798000	Enhancers	Fetal Brain Female	brain
11	chr14:32797000-32798200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr14:32797000-32798400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:32797000-32798600	Enhancers	Left Ventricle	heart
14	chr14:32797000-32799600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:32797200-32797800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr14:32797200-32798000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
17	chr14:32797200-32798200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr14:32797200-32798400	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr14:32797200-32798400	Weak transcription	Ovary	ovary
20	chr14:32797200-32831600	Weak transcription	Right Atrium	heart
21	chr14:32797400-32797800	Enhancers	Brain Substantia Nigra	brain
22	chr14:32797400-32798200	Flanking Active TSS	Brain Angular Gyrus	brain
23	chr14:32797400-32798400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr14:32797400-32800600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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