Variant report

Variant	rs17098871
Chromosome Location	chr14:32818180-32818181
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32817648..32820020-chr14:32823039..32825542,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10130528	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10130788	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10136506	1.00[ASN][1000 genomes]
rs10142935	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10144065	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10483398	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11621646	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11623149	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11623151	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17098745	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17098811	1.00[ASN][1000 genomes]
rs17098891	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17098900	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17392498	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17392924	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17484233	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17484261	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs1951687	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs28360933	1.00[ASN][1000 genomes]
rs3759780	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs3784169	1.00[ASN][1000 genomes]
rs3784170	1.00[ASN][1000 genomes]
rs55760540	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56232509	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58521330	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666130	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72666145	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9322891	1.00[ASN][1000 genomes]
rs9322896	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs954784	1.00[CEU][hapmap];0.97[EUR][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32797200-32831600	Weak transcription	Right Atrium	heart
2	chr14:32802600-32819000	Weak transcription	Fetal Brain Male	brain
3	chr14:32803200-32821600	Weak transcription	Fetal Brain Female	brain
4	chr14:32814000-32827800	Weak transcription	Brain Germinal Matrix	brain
5	chr14:32814800-32824000	Weak transcription	Aorta	Aorta
6	chr14:32815000-32819000	Weak transcription	GM12878-XiMat	blood
7	chr14:32815000-32823600	Weak transcription	Brain Anterior Caudate	brain
8	chr14:32815000-32827000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr14:32815200-32818200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr14:32815200-32823600	Weak transcription	Brain Angular Gyrus	brain
11	chr14:32815400-32821800	Weak transcription	Brain Substantia Nigra	brain
12	chr14:32815400-32825600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr14:32816800-32818200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr14:32817000-32824000	Weak transcription	Gastric	stomach
15	chr14:32817800-32818200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr14:32818000-32819000	Enhancers	HMEC	breast
17	chr14:32818000-32819200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr14:32818000-32819200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr14:32818000-32819400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr14:32818000-32819400	Enhancers	NHEK	skin

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