Variant report

Variant	rs55760540
Chromosome Location	chr14:32807038-32807039
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32802733..32804895-chr14:32807026..32809604,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10144065	0.99[EUR][1000 genomes]
rs10483398	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11621646	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11623149	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11623151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17098871	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17098891	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17098900	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17392498	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17392924	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17484233	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17484261	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1951687	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56232509	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58521330	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72666130	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72666145	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72666159	0.82[AMR][1000 genomes]
rs9322896	0.99[EUR][1000 genomes]
rs954784	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32788800-32811800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr14:32797200-32831600	Weak transcription	Right Atrium	heart
3	chr14:32799400-32814600	Weak transcription	Left Ventricle	heart
4	chr14:32800200-32813200	Weak transcription	Esophagus	oesophagus
5	chr14:32800800-32811600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr14:32801000-32811400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr14:32802600-32819000	Weak transcription	Fetal Brain Male	brain
8	chr14:32802800-32810000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:32803200-32809200	Enhancers	Brain Substantia Nigra	brain
10	chr14:32803200-32814000	Weak transcription	Fetal Intestine Small	intestine
11	chr14:32803200-32821600	Weak transcription	Fetal Brain Female	brain
12	chr14:32805600-32808600	Weak transcription	Brain Angular Gyrus	brain
13	chr14:32805600-32808600	Weak transcription	Brain Hippocampus Middle	brain
14	chr14:32805800-32810800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:32806000-32810200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr14:32806200-32807400	Enhancers	K562	blood
17	chr14:32806200-32811400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr14:32806200-32811800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr14:32806400-32808600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr14:32806400-32808800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr14:32806400-32811200	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr14:32806400-32811200	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr14:32806400-32811400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr14:32806400-32811600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr14:32806400-32811800	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr14:32806600-32808600	Weak transcription	Brain Germinal Matrix	brain
27	chr14:32807000-32807200	Enhancers	Aorta	Aorta
28	chr14:32807000-32807200	Enhancers	Brain Anterior Caudate	brain

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