Variant report

Variant	rs72666130
Chromosome Location	chr14:32812511-32812512
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:32789689..32792160-chr14:32808622..32812879,3	MCF-7	breast:
2	chr14:32807865..32809719-chr14:32810240..32812970,2	MCF-7	breast:
3	chr14:32801679..32804080-chr14:32811528..32814330,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10144065	0.99[EUR][1000 genomes]
rs10483398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11621646	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11623149	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11623151	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17098871	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17098891	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17098900	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17392498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17392924	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17484233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17484261	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1951687	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55760540	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56232509	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58521330	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72666145	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72666159	0.82[AMR][1000 genomes]
rs9322896	0.99[EUR][1000 genomes]
rs954784	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1798445	chr14:32808361-32813639	Enhancers Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32797200-32831600	Weak transcription	Right Atrium	heart
2	chr14:32799400-32814600	Weak transcription	Left Ventricle	heart
3	chr14:32800200-32813200	Weak transcription	Esophagus	oesophagus
4	chr14:32802600-32819000	Weak transcription	Fetal Brain Male	brain
5	chr14:32803200-32814000	Weak transcription	Fetal Intestine Small	intestine
6	chr14:32803200-32821600	Weak transcription	Fetal Brain Female	brain
7	chr14:32807200-32814600	Weak transcription	Aorta	Aorta
8	chr14:32809200-32813200	Weak transcription	Brain Germinal Matrix	brain
9	chr14:32809400-32814400	Weak transcription	HSMMtube	muscle
10	chr14:32809600-32815200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:32809800-32815600	Enhancers	NHEK	skin
12	chr14:32810000-32815600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr14:32810400-32815200	Enhancers	HMEC	breast
14	chr14:32810600-32812600	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr14:32810800-32813400	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr14:32810800-32813800	Enhancers	Brain Anterior Caudate	brain
17	chr14:32811000-32815000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr14:32811000-32815200	Enhancers	Brain Angular Gyrus	brain
19	chr14:32811000-32815400	Enhancers	Brain Hippocampus Middle	brain
20	chr14:32811200-32812600	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr14:32811200-32812600	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr14:32811400-32812600	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr14:32811400-32812600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr14:32811400-32812600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr14:32811400-32812600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr14:32811400-32812600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr14:32811400-32815400	Enhancers	Brain Cingulate Gyrus	brain
28	chr14:32811600-32812600	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr14:32811600-32812600	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr14:32811600-32812600	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr14:32811800-32812600	Enhancers	H1 Cell Line	embryonic stem cell
32	chr14:32811800-32812600	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr14:32811800-32812600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr14:32811800-32813200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr14:32811800-32814400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr14:32811800-32814600	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr14:32812000-32812600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr14:32812000-32813200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr14:32812000-32813200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr14:32812000-32813400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr14:32812000-32813600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr14:32812000-32814200	Weak transcription	NHDF-Ad	bronchial
43	chr14:32812200-32813200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr14:32812200-32814400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr14:32812200-32814600	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr14:32812400-32812600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr14:32812400-32813200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr14:32812400-32813400	Genic enhancers	Brain Substantia Nigra	brain

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