Variant report

Variant	rs17098900
Chromosome Location	chr14:32830307-32830308
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10137472	0.81[CEU][hapmap]
rs10144065	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10483398	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11621646	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11623149	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11623151	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17098838	0.81[CEU][hapmap]
rs17098871	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17098891	0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17387806	1.00[CHB][hapmap]
rs17392498	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17392924	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17484233	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17484261	0.93[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1951687	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55760540	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56232509	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58521330	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72666130	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72666145	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72666159	0.82[AMR][1000 genomes]
rs9322896	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs954784	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32797200-32831600	Weak transcription	Right Atrium	heart
2	chr14:32819200-32834200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:32822400-32834400	Weak transcription	Fetal Brain Female	brain
4	chr14:32828000-32835200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr14:32828200-32830600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr14:32828200-32830600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr14:32828200-32830600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr14:32828200-32831000	Weak transcription	Brain Angular Gyrus	brain
9	chr14:32828200-32831800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr14:32828200-32833400	Weak transcription	Brain Germinal Matrix	brain
11	chr14:32828400-32830400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr14:32828400-32830400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr14:32828400-32830400	Weak transcription	Brain Anterior Caudate	brain
14	chr14:32828400-32830400	Weak transcription	Brain Substantia Nigra	brain
15	chr14:32829000-32831400	Weak transcription	Brain Hippocampus Middle	brain

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