Variant report
| Variant | rs10143940 |
|---|---|
| Chromosome Location | chr14:32752694-32752695 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10133212 | 0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10136037 | 0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10483402 | 0.89[ASN][1000 genomes] |
| rs11156735 | 0.91[ASN][1000 genomes] |
| rs12588434 | 0.96[ASN][1000 genomes] |
| rs12588534 | 0.94[ASN][1000 genomes] |
| rs12878639 | 0.89[ASN][1000 genomes] |
| rs12886552 | 0.84[AFR][1000 genomes] |
| rs1951677 | 0.92[ASN][1000 genomes] |
| rs1957642 | 0.92[ASN][1000 genomes] |
| rs2383307 | 0.89[ASN][1000 genomes] |
| rs2383308 | 0.89[ASN][1000 genomes] |
| rs34022200 | 0.96[ASN][1000 genomes] |
| rs34330292 | 0.90[ASN][1000 genomes] |
| rs34777318 | 0.96[ASN][1000 genomes] |
| rs34791667 | 0.96[ASN][1000 genomes] |
| rs4573842 | 0.89[ASN][1000 genomes] |
| rs6571503 | 0.90[ASN][1000 genomes] |
| rs7144152 | 0.96[ASN][1000 genomes] |
| rs7145895 | 0.90[ASN][1000 genomes] |
| rs7159059 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7161416 | 0.92[ASN][1000 genomes] |
| rs8019577 | 0.99[ASN][1000 genomes] |
| rs8020579 | 0.95[ASN][1000 genomes] |
| rs8021336 | 0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3527777 | chr14:32669175-32761850 | Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | esv3527778 | chr14:32669175-32761850 | Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:32742800-32752800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
