Variant report

Variant	rs11156735
Chromosome Location	chr14:32772850-32772851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32766101..32767938-chr14:32771475..32774012,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10133212	0.93[ASN][1000 genomes]
rs10136037	0.95[ASN][1000 genomes]
rs10143940	0.91[ASN][1000 genomes]
rs10483402	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10872861	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12588434	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12588534	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12878639	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12886552	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1951677	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1957642	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2383307	0.98[ASN][1000 genomes]
rs2383308	0.98[ASN][1000 genomes]
rs34022200	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34330292	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34777318	0.91[ASN][1000 genomes]
rs34791667	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4573842	0.98[ASN][1000 genomes]
rs6571503	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7144152	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7145895	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7161416	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8019577	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8020579	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8021336	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9672066	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901594	chr14:32772850-32786268	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32765200-32773600	Weak transcription	Pancreas	Pancrea
2	chr14:32768000-32780000	Weak transcription	Psoas Muscle	Psoas
3	chr14:32768200-32773400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr14:32768600-32776600	Weak transcription	Colon Smooth Muscle	Colon
5	chr14:32769800-32777200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:32769800-32780800	Weak transcription	Left Ventricle	heart
7	chr14:32770000-32773200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr14:32772200-32774000	Enhancers	Liver	Liver
9	chr14:32772400-32774000	Enhancers	Fetal Intestine Small	intestine
10	chr14:32772600-32773200	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr14:32772800-32773600	Enhancers	Fetal Heart	heart
12	chr14:32772800-32773800	Enhancers	HepG2	liver
13	chr14:32772800-32778400	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links