Variant report

Variant	rs12878639
Chromosome Location	chr14:32737599-32737600
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10133212	0.89[ASN][1000 genomes]
rs10136037	0.85[ASN][1000 genomes]
rs10143940	0.89[ASN][1000 genomes]
rs10483402	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11156735	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12588434	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12588534	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12883285	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12886552	0.82[EUR][1000 genomes]
rs1951677	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1957642	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2383307	0.84[ASN][1000 genomes]
rs2383308	0.84[ASN][1000 genomes]
rs34022200	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34330292	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34777318	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34791667	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4573842	0.84[ASN][1000 genomes]
rs6571503	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7144152	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7145895	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7161416	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8019577	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8020579	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8021336	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3527777	chr14:32669175-32761850	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3527778	chr14:32669175-32761850	Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32719000-32737600	Weak transcription	Left Ventricle	heart
2	chr14:32728200-32742400	Weak transcription	Right Ventricle	heart
3	chr14:32729600-32739000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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