Variant report

Variant	rs10144554
Chromosome Location	chr14:65321514-65321515
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10873177	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11158564	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11628910	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12435626	0.85[TSI][hapmap]
rs1467569	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1467570	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1467571	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1467573	1.00[CEU][hapmap];0.91[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1570296	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17102320	1.00[CEU][hapmap];0.95[CHB][hapmap]
rs1951490	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1951491	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1951492	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1951495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1957427	0.85[EUR][1000 genomes]
rs1957431	0.83[ASN][1000 genomes]
rs1957432	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1957434	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1957435	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1957436	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1998333	0.83[ASN][1000 genomes]
rs2269292	0.85[TSI][hapmap]
rs2269293	0.80[TSI][hapmap]
rs230723	0.95[TSI][hapmap]
rs28370916	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2884308	0.89[CEU][hapmap];0.91[CHB][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs368818	0.84[CHB][hapmap]
rs3813422	1.00[CEU][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3813423	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3819918	0.84[TSI][hapmap]
rs4899150	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.84[TSI][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902325	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902327	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6573580	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6573581	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6573583	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7141985	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7143541	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs7144515	0.95[TSI][hapmap]
rs7144718	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7149922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs763346	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8008745	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8009510	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8009996	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8013772	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9783609	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693408	chr14:65292670-65358576	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10144554	RAB15	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65315400-65324600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr14:65318400-65322400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:65319400-65324200	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr14:65319400-65332600	Weak transcription	Right Atrium	heart
5	chr14:65320200-65328400	Weak transcription	Fetal Heart	heart
6	chr14:65320400-65321600	Weak transcription	Spleen	Spleen
7	chr14:65320400-65322600	Weak transcription	Right Ventricle	heart
8	chr14:65320600-65322600	Weak transcription	K562	blood
9	chr14:65320600-65323200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr14:65321000-65324000	Enhancers	Psoas Muscle	Psoas
11	chr14:65321000-65324800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr14:65321200-65322800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr14:65321200-65323200	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr14:65321400-65321600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr14:65321400-65321600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr14:65321400-65321600	Enhancers	Primary hematopoietic stem cells	blood
17	chr14:65321400-65321800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr14:65321400-65322000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
19	chr14:65321400-65322000	Enhancers	Fetal Thymus	thymus
20	chr14:65321400-65323000	Enhancers	Fetal Muscle Trunk	muscle
21	chr14:65321400-65323200	Enhancers	Left Ventricle	heart
22	chr14:65321400-65324000	Enhancers	Fetal Muscle Leg	muscle

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