Variant report

Variant	rs10873177
Chromosome Location	chr14:65318228-65318229
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65318120..65320301-chr14:65322198..65325013,2	MCF-7	breast:
2	chr14:65317600..65319919-chr14:65379346..65381872,2	MCF-7	breast:
3	chr14:65306058..65308869-chr14:65317790..65319964,2	MCF-7	breast:
4	chr14:65310132..65314457-chr14:65315119..65319141,7	K562	blood:
5	chr14:65309823..65312590-chr14:65316420..65318334,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258289	Chromatin interaction
ENSG00000125954	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10144554	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11158564	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11628910	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1467569	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1467570	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1467571	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1467573	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1570296	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1951490	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1951491	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1951492	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1951495	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1957427	0.85[EUR][1000 genomes]
rs1957431	0.82[ASN][1000 genomes]
rs1957432	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1957434	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1957435	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1957436	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1998333	0.82[ASN][1000 genomes]
rs28370916	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2884308	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3813422	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3813423	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4899150	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4902325	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4902327	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6573580	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6573581	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6573583	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7141985	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7144718	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7149922	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs763346	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8008745	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8009510	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8009996	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8013772	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9783609	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693408	chr14:65292670-65358576	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10873177	RAB15	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65314600-65318800	Weak transcription	Right Atrium	heart
2	chr14:65314800-65318800	Weak transcription	Fetal Heart	heart
3	chr14:65314800-65319000	Weak transcription	Right Ventricle	heart
4	chr14:65315000-65318800	Weak transcription	K562	blood
5	chr14:65315400-65324600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr14:65317400-65318800	Weak transcription	Left Ventricle	heart
7	chr14:65317400-65320000	Weak transcription	Psoas Muscle	Psoas
8	chr14:65318000-65318400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:65318000-65318400	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
10	chr14:65318000-65319400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr14:65318200-65319000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr14:65318200-65321400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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