Variant report

Variant	rs11158564
Chromosome Location	chr14:65335082-65335083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65331676..65335565-chr14:65336608..65339338,3	MCF-7	breast:
2	chr14:65307162..65309690-chr14:65332529..65335458,2	K562	blood:
3	chr14:65334916..65335867-chr5:88856408..88857237,2	MCF-7	breast:
4	chr14:65333231..65337568-chr14:65342616..65346293,4	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10144554	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10873177	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11628910	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1467569	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1467570	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1467571	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1467573	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1570296	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1951490	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1951491	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1951492	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1951495	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1957427	0.85[EUR][1000 genomes]
rs1957431	0.83[ASN][1000 genomes]
rs1957432	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1957434	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1957435	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1957436	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1998333	0.83[ASN][1000 genomes]
rs28370916	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2884308	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3813422	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3813423	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4899150	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902325	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902327	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6573580	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6573581	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6573583	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7141985	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7144718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7149922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs763346	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8008745	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8009510	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8009996	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8013772	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9783609	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693408	chr14:65292670-65358576	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv516238	chr14:65327288-65358576	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11158564	RAB15	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65331600-65335800	Enhancers	Psoas Muscle	Psoas
2	chr14:65331800-65342400	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr14:65332800-65335600	Enhancers	Right Ventricle	heart
4	chr14:65333200-65336000	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr14:65334200-65335200	Weak transcription	K562	blood
6	chr14:65334200-65340800	Weak transcription	Fetal Heart	heart
7	chr14:65334200-65342000	Weak transcription	Right Atrium	heart
8	chr14:65335000-65335200	Enhancers	Left Ventricle	heart

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