Variant report

Variant	rs10145476
Chromosome Location	chr14:39655603-39655604
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:39654749..39656779-chr14:39701075..39703630,2	K562	blood:
2	chr14:39651767..39657982-chr14:39696424..39701629,5	MCF-7	breast:
3	chr14:39655012..39658223-chr14:39734448..39737542,3	MCF-7	breast:
4	chr14:39653322..39655691-chr14:39686877..39688589,2	MCF-7	breast:
5	chr14:39650808..39656380-chr14:39733766..39738257,10	MCF-7	breast:
6	chr14:39655214..39656857-chr14:39716747..39718592,2	K562	blood:
7	chr14:39571020..39573430-chr14:39654386..39657374,3	K562	blood:
8	chr14:39655421..39657718-chr14:39690495..39693068,2	K562	blood:
9	chr14:39654966..39657537-chr14:39669625..39671853,2	K562	blood:
10	chr14:39654966..39657894-chr14:39668988..39671853,2	K562	blood:
11	chr14:39571888..39573621-chr14:39654592..39656288,2	K562	blood:
12	chr14:39654703..39656362-chr8:144814498..144816191,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000100934	Chromatin interaction
ENSG00000258941	Chromatin interaction
ENSG00000265660	Chromatin interaction
ENSG00000150526	Chromatin interaction
ENSG00000150527	Chromatin interaction
ENSG00000180921	Chromatin interaction
ENSG00000258940	Chromatin interaction
ENSG00000258651	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1002193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10129762	0.83[AMR][1000 genomes]
rs10131369	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10134166	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10135561	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10136637	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10140763	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10141924	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10142117	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10142350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10145417	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10146176	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10148712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1040680	0.83[AMR][1000 genomes]
rs1050136	0.96[ASN][1000 genomes]
rs11622731	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11622968	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11624584	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11626002	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11627264	0.82[AMR][1000 genomes]
rs11628784	0.80[ASN][1000 genomes]
rs11849209	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11850579	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11851680	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12587208	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13021	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13379129	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17092044	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17092050	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17108696	0.82[AMR][1000 genomes]
rs17108948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2273592	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28437577	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28470602	0.82[AMR][1000 genomes]
rs28501673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28583114	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28666016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28701960	0.81[ASN][1000 genomes]
rs28821293	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs45622837	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55737943	0.82[AMR][1000 genomes]
rs56105133	0.82[AMR][1000 genomes]
rs57326310	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs57482489	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs57555422	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58601678	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs59465524	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7155307	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74048710	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74048711	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs761805	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs926970	0.82[AMR][1000 genomes]
rs993675	0.82[AMR][1000 genomes]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39645800-39657200	Strong transcription	HSMM	muscle
2	chr14:39646400-39655800	Strong transcription	Fetal Thymus	thymus
3	chr14:39647800-39658800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:39650800-39655800	Weak transcription	Fetal Heart	heart
5	chr14:39650800-39656200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr14:39651000-39655800	Weak transcription	Esophagus	oesophagus
7	chr14:39651000-39655800	Weak transcription	Ovary	ovary
8	chr14:39651000-39656000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr14:39651000-39656400	Strong transcription	GM12878-XiMat	blood
10	chr14:39651000-39656600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr14:39651000-39657000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:39651000-39661600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr14:39651000-39662000	Weak transcription	Pancreas	Pancrea
14	chr14:39651200-39656200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr14:39651200-39656200	Weak transcription	Brain Angular Gyrus	brain
16	chr14:39651200-39657000	Weak transcription	Small Intestine	intestine
17	chr14:39652000-39656000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr14:39652200-39655800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr14:39652200-39656200	Weak transcription	Fetal Brain Male	brain
20	chr14:39652400-39657200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr14:39652600-39655800	Weak transcription	Brain Anterior Caudate	brain
22	chr14:39652600-39655800	Strong transcription	Fetal Muscle Trunk	muscle
23	chr14:39653000-39656200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr14:39653000-39658000	Weak transcription	Fetal Lung	lung
25	chr14:39653000-39662000	Weak transcription	Primary hematopoietic stem cells	blood
26	chr14:39653200-39656400	Weak transcription	K562	blood
27	chr14:39653200-39656800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr14:39653200-39661600	Weak transcription	Right Ventricle	heart
29	chr14:39653400-39657000	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr14:39653400-39662000	Weak transcription	NHDF-Ad	bronchial
31	chr14:39653600-39658800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr14:39654000-39657200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr14:39654200-39655800	Weak transcription	Brain Substantia Nigra	brain
34	chr14:39654200-39656400	Weak transcription	NHEK	skin
35	chr14:39654200-39657000	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr14:39654400-39655800	Weak transcription	HepG2	liver
37	chr14:39654400-39656000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr14:39654400-39656000	Weak transcription	Aorta	Aorta
39	chr14:39654400-39656000	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr14:39654400-39656000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr14:39654400-39656000	Weak transcription	Gastric	stomach
42	chr14:39654400-39656000	Weak transcription	NHLF	lung
43	chr14:39654400-39656200	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr14:39654400-39656800	Weak transcription	Spleen	Spleen
45	chr14:39654400-39657000	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr14:39654400-39657400	Weak transcription	Primary B cells from cord blood	blood
47	chr14:39654400-39657800	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr14:39654400-39658400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr14:39654400-39658800	Weak transcription	Thymus	Thymus
50	chr14:39654400-39661600	Weak transcription	Left Ventricle	heart

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