Variant report

Variant	rs28701960
Chromosome Location	chr14:39602232-39602233
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1002193	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10131369	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10135561	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10141924	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10142350	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10145417	0.85[ASN][1000 genomes]
rs10145476	0.81[ASN][1000 genomes]
rs10146176	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10148712	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1050136	0.85[ASN][1000 genomes]
rs11622968	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11624584	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11626002	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11849209	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11850579	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11851680	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13021	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17092050	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17108948	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2273592	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28437577	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28501673	0.85[ASN][1000 genomes]
rs28583114	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28666016	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs45622837	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7155307	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74048710	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74048711	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs761805	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1038622	chr14:39423562-39604035	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	esv3340792	chr14:39601226-39603774	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3431456	chr14:39601526-39603549	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39583800-39626000	Weak transcription	Spleen	Spleen
2	chr14:39584000-39615000	Weak transcription	Pancreas	Pancrea
3	chr14:39584000-39623600	Weak transcription	Esophagus	oesophagus
4	chr14:39584200-39610800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:39584200-39636000	Weak transcription	Small Intestine	intestine
6	chr14:39584200-39638600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr14:39584400-39617200	Weak transcription	Psoas Muscle	Psoas
8	chr14:39584400-39620800	Weak transcription	Colonic Mucosa	Colon
9	chr14:39584400-39626600	Weak transcription	Aorta	Aorta
10	chr14:39584600-39603600	Weak transcription	K562	blood
11	chr14:39584600-39604600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr14:39584600-39609600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:39584600-39625800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr14:39585200-39608200	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr14:39585800-39608200	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr14:39586000-39608000	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr14:39586000-39608400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr14:39586000-39608600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:39586000-39608800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr14:39586600-39610600	Strong transcription	HepG2	liver
21	chr14:39587200-39609600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr14:39587400-39608400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr14:39587600-39607800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr14:39588600-39635400	Weak transcription	Fetal Brain Male	brain
25	chr14:39589200-39604800	Weak transcription	HSMMtube	muscle
26	chr14:39589200-39609200	Weak transcription	Gastric	stomach
27	chr14:39589200-39610000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr14:39589200-39618000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr14:39589200-39626400	Weak transcription	Fetal Heart	heart
30	chr14:39589600-39603000	Weak transcription	NHEK	skin
31	chr14:39591200-39603000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr14:39591800-39606600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr14:39592400-39603600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr14:39592600-39603000	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr14:39592600-39603800	Weak transcription	NHDF-Ad	bronchial
36	chr14:39592600-39605200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr14:39592600-39622200	Weak transcription	Right Ventricle	heart
38	chr14:39592800-39603000	Weak transcription	Brain Hippocampus Middle	brain
39	chr14:39592800-39603000	Weak transcription	HUVEC	blood vessel
40	chr14:39592800-39603800	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr14:39592800-39606600	Weak transcription	Brain Cingulate Gyrus	brain
42	chr14:39592800-39607400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr14:39592800-39618000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr14:39592800-39626600	Weak transcription	NHLF	lung
45	chr14:39593400-39604800	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr14:39593600-39603200	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr14:39594000-39603000	Weak transcription	Primary hematopoietic stem cells	blood
48	chr14:39594000-39603000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr14:39594000-39620800	Weak transcription	Hela-S3	cervix
50	chr14:39594600-39606600	Weak transcription	Fetal Kidney	kidney

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