Variant report

Variant	rs7155307
Chromosome Location	chr14:39617888-39617889
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:39591967..39594442-chr14:39615758..39618049,2	MCF-7	breast:
2	chr14:39615859..39619392-chr14:39639334..39641256,3	MCF-7	breast:
3	chr14:39614473..39616269-chr14:39616886..39619440,2	MCF-7	breast:
4	chr14:39616786..39619391-chr14:39641245..39644143,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182400	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1002193	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10129762	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10131369	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10134166	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10134656	0.82[AMR][1000 genomes]
rs10135561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10136637	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10140763	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10141079	0.82[AMR][1000 genomes]
rs10141081	0.82[AMR][1000 genomes]
rs10141924	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10142117	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10142350	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10145417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10145476	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10146176	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10148712	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10150756	0.82[AMR][1000 genomes]
rs1040680	0.83[AMR][1000 genomes]
rs1050136	0.99[ASN][1000 genomes]
rs11622731	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11622968	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11623907	0.82[AMR][1000 genomes]
rs11623945	0.82[AMR][1000 genomes]
rs11624584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11625689	0.82[AMR][1000 genomes]
rs11626002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11627264	0.82[AMR][1000 genomes]
rs11628564	0.82[AMR][1000 genomes]
rs11628784	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11845793	0.82[AMR][1000 genomes]
rs11848067	0.82[AMR][1000 genomes]
rs11849209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11850579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11851680	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12323565	0.82[AMR][1000 genomes]
rs12587208	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13379129	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17092044	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17092050	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17108596	0.82[AMR][1000 genomes]
rs17108696	0.82[AMR][1000 genomes]
rs17108948	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2025061	0.82[AMR][1000 genomes]
rs2144528	0.82[AMR][1000 genomes]
rs2273592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28414518	0.82[AMR][1000 genomes]
rs28437577	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28470602	0.82[AMR][1000 genomes]
rs28501673	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28583114	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28666016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28701960	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28821293	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs45622837	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55672305	0.82[AMR][1000 genomes]
rs55737943	0.82[AMR][1000 genomes]
rs56064304	0.82[AMR][1000 genomes]
rs56105133	0.82[AMR][1000 genomes]
rs57326310	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs57482489	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57555422	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58601678	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59465524	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7144625	0.82[AMR][1000 genomes]
rs7159520	0.82[AMR][1000 genomes]
rs74048710	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74048711	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs761805	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8019396	0.82[AMR][1000 genomes]
rs926970	0.82[AMR][1000 genomes]
rs993675	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1051247	chr14:39604035-39652789	Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39583800-39626000	Weak transcription	Spleen	Spleen
2	chr14:39584000-39623600	Weak transcription	Esophagus	oesophagus
3	chr14:39584200-39636000	Weak transcription	Small Intestine	intestine
4	chr14:39584200-39638600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:39584400-39620800	Weak transcription	Colonic Mucosa	Colon
6	chr14:39584400-39626600	Weak transcription	Aorta	Aorta
7	chr14:39584600-39625800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr14:39588600-39635400	Weak transcription	Fetal Brain Male	brain
9	chr14:39589200-39618000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr14:39589200-39626400	Weak transcription	Fetal Heart	heart
11	chr14:39592600-39622200	Weak transcription	Right Ventricle	heart
12	chr14:39592800-39618000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr14:39592800-39626600	Weak transcription	NHLF	lung
14	chr14:39594000-39620800	Weak transcription	Hela-S3	cervix
15	chr14:39596200-39621200	Weak transcription	Brain Substantia Nigra	brain
16	chr14:39598600-39618000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr14:39598800-39636200	Weak transcription	Stomach Mucosa	stomach
18	chr14:39604400-39635400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr14:39604800-39622400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr14:39605200-39621200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr14:39605800-39625200	Weak transcription	HSMMtube	muscle
22	chr14:39606800-39621200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr14:39607000-39621200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr14:39607000-39625400	Weak transcription	Fetal Kidney	kidney
25	chr14:39607200-39619400	Weak transcription	HMEC	breast
26	chr14:39607200-39623800	Weak transcription	Ovary	ovary
27	chr14:39608200-39618000	Weak transcription	Brain Hippocampus Middle	brain
28	chr14:39608200-39620000	Weak transcription	Brain Angular Gyrus	brain
29	chr14:39608200-39622000	Weak transcription	Brain Anterior Caudate	brain
30	chr14:39608200-39630600	Weak transcription	NHEK	skin
31	chr14:39608800-39620000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr14:39609600-39618200	Weak transcription	Osteobl	bone
33	chr14:39610000-39623000	Weak transcription	Gastric	stomach
34	chr14:39611000-39619800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr14:39611000-39619800	Weak transcription	Lung	lung
36	chr14:39611000-39622000	Weak transcription	Thymus	Thymus
37	chr14:39611000-39622200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr14:39611000-39637600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr14:39611200-39619800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr14:39611200-39621000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr14:39611200-39621000	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr14:39611200-39622400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr14:39611200-39622600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr14:39611200-39638800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr14:39611400-39618600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr14:39611400-39619800	Weak transcription	Fetal Intestine Small	intestine
47	chr14:39611400-39622600	Weak transcription	Brain Germinal Matrix	brain
48	chr14:39611400-39638000	Weak transcription	A549	lung
49	chr14:39612000-39631600	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr14:39612400-39619600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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