Variant report

Variant	rs10147108
Chromosome Location	chr14:72966971-72966972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10131083	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10138138	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1017082	0.83[CHB][hapmap];0.86[EUR][1000 genomes]
rs1017083	0.86[EUR][1000 genomes]
rs11158960	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11620663	0.86[EUR][1000 genomes]
rs11621407	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11621791	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11622246	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11622509	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11623039	0.87[EUR][1000 genomes]
rs11623448	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11623449	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11626185	0.85[EUR][1000 genomes]
rs11628659	1.00[CEU][hapmap]
rs11629448	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11844952	0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12586412	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs12885387	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs17116719	0.83[AFR][1000 genomes]
rs17180712	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1859475	0.81[EUR][1000 genomes]
rs2023957	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2189810	0.89[JPT][hapmap]
rs2238171	0.83[CHB][hapmap];0.87[EUR][1000 genomes]
rs2238174	0.92[EUR][1000 genomes]
rs2238175	0.83[CHB][hapmap];0.91[EUR][1000 genomes]
rs2238176	0.83[CHB][hapmap];0.91[EUR][1000 genomes]
rs2286072	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28499014	0.92[EUR][1000 genomes]
rs28698186	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28788858	0.84[EUR][1000 genomes]
rs3784044	0.86[EUR][1000 genomes]
rs4346151	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4419001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4617784	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4617785	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5008274	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56989014	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57126808	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58049100	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59911600	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7144114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7144560	0.85[EUR][1000 genomes]
rs7161138	0.87[EUR][1000 genomes]
rs7161176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7161290	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7161351	0.86[EUR][1000 genomes]
rs73300706	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7493857	0.85[EUR][1000 genomes]
rs757654	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[EUR][1000 genomes]
rs8008812	0.86[EUR][1000 genomes]
rs8009340	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8009343	0.87[EUR][1000 genomes]
rs8010440	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	esv3451672	chr14:72966803-72967355	Enhancers Weak transcription Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72956600-72980400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:72962400-72967200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:72965400-72967200	Enhancers	GM12878-XiMat	blood
4	chr14:72965400-72967800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:72965400-72970800	Strong transcription	Cortex derived primary cultured neurospheres	brain
6	chr14:72966600-72967600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr14:72966600-72968000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr14:72966800-72967400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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