Variant report

Variant	rs1859475
Chromosome Location	chr14:72997669-72997670
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10131083	0.88[EUR][1000 genomes]
rs10138138	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10147108	0.81[EUR][1000 genomes]
rs1017082	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1017083	0.87[EUR][1000 genomes]
rs11158960	0.94[ASW][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.92[MEX][hapmap];0.85[MKK][hapmap];0.94[TSI][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11620663	1.00[CEU][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs11621407	0.88[EUR][1000 genomes]
rs11621791	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11622246	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11622509	0.89[EUR][1000 genomes]
rs11623039	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs11623448	0.91[EUR][1000 genomes]
rs11623449	0.91[EUR][1000 genomes]
rs11626185	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11628539	1.00[CEU][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes]
rs11628659	0.83[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11629448	0.83[EUR][1000 genomes]
rs11844952	1.00[CEU][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes]
rs17117164	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17180712	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17180754	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2023957	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2238171	1.00[CEU][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs2238174	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2238175	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2238176	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2286072	1.00[CEU][hapmap];0.86[TSI][hapmap];0.91[EUR][1000 genomes]
rs28499014	0.88[EUR][1000 genomes]
rs28698186	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28788858	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3784043	1.00[CEU][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs3784044	1.00[CEU][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs4346151	0.83[EUR][1000 genomes]
rs4419001	0.83[EUR][1000 genomes]
rs4617784	0.83[EUR][1000 genomes]
rs4617785	0.82[EUR][1000 genomes]
rs5008274	1.00[CEU][hapmap];0.86[TSI][hapmap];0.91[EUR][1000 genomes]
rs56989014	0.88[EUR][1000 genomes]
rs57126808	0.87[EUR][1000 genomes]
rs58049100	0.88[EUR][1000 genomes]
rs59911600	0.85[EUR][1000 genomes]
rs7144114	0.83[EUR][1000 genomes]
rs7144560	1.00[CEU][hapmap];0.86[TSI][hapmap];0.91[EUR][1000 genomes]
rs7161138	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7161176	0.81[EUR][1000 genomes]
rs7161290	0.83[EUR][1000 genomes]
rs7161351	1.00[CEU][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs73300706	0.87[EUR][1000 genomes]
rs7493857	0.91[EUR][1000 genomes]
rs757654	0.86[EUR][1000 genomes]
rs8008812	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs8009340	1.00[CEU][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes]
rs8009343	1.00[CEU][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs8010440	1.00[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	esv1843592	chr14:72967991-73007547	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72984400-73011000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:72991200-72998600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr14:72991200-72998800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr14:72991400-72998200	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr14:72991400-73001600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr14:72992200-72998000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr14:72992200-73001400	Weak transcription	Spleen	Spleen
8	chr14:72995800-73000200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr14:72996000-72998000	Weak transcription	Fetal Thymus	thymus
10	chr14:72996000-72998800	Weak transcription	Primary B cells from cord blood	blood
11	chr14:72996200-72998600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr14:72996400-72999200	Weak transcription	Ovary	ovary
13	chr14:72996600-72998200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr14:72996600-73003200	Weak transcription	Fetal Stomach	stomach
15	chr14:72997400-72999800	Enhancers	Primary B cells from peripheral blood	blood
16	chr14:72997400-73003600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr14:72997600-72998400	Enhancers	GM12878-XiMat	blood
18	chr14:72997600-73000000	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr14:72997600-73003400	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr14:72997600-73003800	Enhancers	Primary T helper cells PMA-I stimulated	--

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