Variant report

Variant	rs28788858
Chromosome Location	chr14:73000147-73000148
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10131083	0.81[EUR][1000 genomes]
rs10147108	0.84[EUR][1000 genomes]
rs1017082	0.80[EUR][1000 genomes]
rs1017083	0.80[EUR][1000 genomes]
rs11158960	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11620663	0.85[EUR][1000 genomes]
rs11621407	0.81[EUR][1000 genomes]
rs11621791	0.81[EUR][1000 genomes]
rs11622246	0.81[EUR][1000 genomes]
rs11622509	0.83[EUR][1000 genomes]
rs11623039	0.86[EUR][1000 genomes]
rs11623448	0.84[EUR][1000 genomes]
rs11623449	0.84[EUR][1000 genomes]
rs11626185	0.84[EUR][1000 genomes]
rs11628539	0.81[EUR][1000 genomes]
rs11628659	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11629448	0.91[EUR][1000 genomes]
rs11844952	0.81[EUR][1000 genomes]
rs17117164	0.84[EUR][1000 genomes]
rs17180712	0.84[EUR][1000 genomes]
rs17180754	0.81[EUR][1000 genomes]
rs1859475	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2023957	0.85[EUR][1000 genomes]
rs2238171	0.86[EUR][1000 genomes]
rs2238174	0.81[EUR][1000 genomes]
rs2238175	0.80[EUR][1000 genomes]
rs2238176	0.80[EUR][1000 genomes]
rs2286072	0.84[EUR][1000 genomes]
rs28499014	0.81[EUR][1000 genomes]
rs28698186	0.81[EUR][1000 genomes]
rs3784043	0.86[EUR][1000 genomes]
rs3784044	0.85[EUR][1000 genomes]
rs4346151	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4419001	0.91[EUR][1000 genomes]
rs4617784	0.91[EUR][1000 genomes]
rs4617785	0.90[EUR][1000 genomes]
rs5008274	0.84[EUR][1000 genomes]
rs56989014	0.81[EUR][1000 genomes]
rs57126808	0.80[EUR][1000 genomes]
rs58049100	0.81[EUR][1000 genomes]
rs59911600	0.92[EUR][1000 genomes]
rs7144114	0.91[EUR][1000 genomes]
rs7144560	0.84[EUR][1000 genomes]
rs7161138	0.81[EUR][1000 genomes]
rs7161176	0.89[EUR][1000 genomes]
rs7161290	0.91[EUR][1000 genomes]
rs7161351	0.80[EUR][1000 genomes]
rs73300706	0.80[EUR][1000 genomes]
rs7493857	0.84[EUR][1000 genomes]
rs757654	0.94[EUR][1000 genomes]
rs8008812	0.85[EUR][1000 genomes]
rs8009343	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	esv1843592	chr14:72967991-73007547	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72984400-73011000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:72991400-73001600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr14:72992200-73001400	Weak transcription	Spleen	Spleen
4	chr14:72995800-73000200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:72996600-73003200	Weak transcription	Fetal Stomach	stomach
6	chr14:72997400-73003600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr14:72997600-73003400	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr14:72997600-73003800	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr14:72997800-73003200	Enhancers	Primary T cells fromperipheralblood	blood
10	chr14:72997800-73004000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr14:72998200-73003800	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr14:72998600-73000200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr14:72998800-73001200	ZNF genes & repeats	Primary B cells from cord blood	blood
14	chr14:72999200-73001600	Weak transcription	Fetal Thymus	thymus
15	chr14:72999400-73000800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr14:72999400-73009600	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr14:72999800-73000200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
18	chr14:72999800-73000400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
19	chr14:72999800-73001000	ZNF genes & repeats	Primary T cells from cord blood	blood
20	chr14:73000000-73000600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr14:73000000-73001000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr14:73000000-73001000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr14:73000000-73001000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr14:73000000-73001200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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