Variant report

Variant	rs10148005
Chromosome Location	chr14:97256312-97256313
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:97251859..97256627-chr14:97261114..97265301,5	K562	blood:
2	chr14:97252075..97254821-chr14:97254880..97257598,2	K562	blood:

Variant related genes	Relation type
ENSG00000100749	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10131762	1.00[EUR][1000 genomes]
rs10132650	0.81[EUR][1000 genomes]
rs10138598	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs10143496	0.81[EUR][1000 genomes]
rs10146186	0.81[EUR][1000 genomes]
rs10148863	0.85[CEU][hapmap]
rs10148869	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs11624977	0.83[ASN][1000 genomes]
rs11625059	0.83[ASN][1000 genomes]
rs1957133	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs2008331	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2145637	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2369902	0.86[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs28463730	0.94[EUR][1000 genomes]
rs28567991	0.81[EUR][1000 genomes]
rs28582851	0.81[EUR][1000 genomes]
rs28587799	0.81[EUR][1000 genomes]
rs28635274	0.81[EUR][1000 genomes]
rs28640027	0.81[EUR][1000 genomes]
rs28667199	0.81[EUR][1000 genomes]
rs28775320	0.94[EUR][1000 genomes]
rs55696055	1.00[EUR][1000 genomes]
rs59426888	1.00[EUR][1000 genomes]
rs60476292	1.00[EUR][1000 genomes]
rs73355666	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74076130	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8019781	0.81[EUR][1000 genomes]
rs8022356	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8023145	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041078	chr14:97001679-97279220	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050075	chr14:97004951-97279220	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv510650	chr14:97238489-97325221	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97254400-97261400	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr14:97254800-97260200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr14:97255000-97257600	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr14:97255800-97258000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr14:97256000-97256400	Bivalent Enhancer	Primary B cells from cord blood	blood

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