Variant report

Variant	rs28582851
Chromosome Location	chr14:97291062-97291063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:97264592..97266800-chr14:97290033..97292350,2	K562	blood:
2	chr14:97288589..97291273-chr14:97305528..97308304,2	K562	blood:
3	chr14:97273377..97275528-chr14:97290757..97293307,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10131762	0.81[EUR][1000 genomes]
rs10132650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10138598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10141420	0.86[ASN][1000 genomes]
rs10142862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10143496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10143993	0.86[ASN][1000 genomes]
rs10146186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10148005	0.81[EUR][1000 genomes]
rs10148863	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10148869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13379109	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1885161	0.81[EUR][1000 genomes]
rs2145637	0.81[EUR][1000 genomes]
rs2369902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28441425	0.86[ASN][1000 genomes]
rs28463730	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28567991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28587799	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28635274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28640027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28667199	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28775320	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs45452297	0.86[ASN][1000 genomes]
rs55696055	0.81[EUR][1000 genomes]
rs57221296	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58143547	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59426888	0.81[EUR][1000 genomes]
rs60476292	0.81[EUR][1000 genomes]
rs73355666	0.81[EUR][1000 genomes]
rs74076130	0.81[EUR][1000 genomes]
rs74076183	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74076190	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8019781	1.00[EUR][1000 genomes]
rs8022356	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv510650	chr14:97238489-97325221	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1052138	chr14:97271794-97322583	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv542180	chr14:97271794-97322583	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1043916	chr14:97275088-97320354	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1051182	chr14:97275088-97337039	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97264800-97321600	Weak transcription	Psoas Muscle	Psoas
2	chr14:97265200-97293200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr14:97265600-97291800	Weak transcription	A549	lung
4	chr14:97266200-97303200	Weak transcription	Hela-S3	cervix
5	chr14:97271600-97313800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr14:97272400-97293800	Weak transcription	Primary B cells from cord blood	blood
7	chr14:97281400-97299800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr14:97282600-97293200	Weak transcription	Dnd41	blood
9	chr14:97282600-97300200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr14:97282800-97301800	Weak transcription	Thymus	Thymus
11	chr14:97283000-97293200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr14:97283000-97293400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr14:97283000-97299800	Weak transcription	Fetal Thymus	thymus
14	chr14:97283000-97300800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr14:97283400-97292200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr14:97283400-97294200	Weak transcription	Primary T cells from cord blood	blood
17	chr14:97284600-97291400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr14:97284600-97299000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr14:97284600-97313800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr14:97286800-97298800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr14:97287000-97301600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr14:97288000-97292000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr14:97288200-97291400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr14:97288200-97291800	Weak transcription	Brain Germinal Matrix	brain
25	chr14:97288200-97293000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr14:97288200-97293200	Weak transcription	Gastric	stomach
27	chr14:97288200-97293800	Weak transcription	Fetal Brain Female	brain
28	chr14:97288200-97294200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr14:97288200-97303200	Weak transcription	Brain Anterior Caudate	brain
30	chr14:97288200-97314400	Weak transcription	Lung	lung
31	chr14:97288400-97293200	Weak transcription	Esophagus	oesophagus
32	chr14:97288400-97293200	Weak transcription	Spleen	Spleen
33	chr14:97288400-97299800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr14:97288600-97293200	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr14:97289400-97302000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr14:97290200-97292200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr14:97290400-97291600	Enhancers	NHLF	lung
38	chr14:97290400-97292000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr14:97290600-97291200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr14:97290600-97291200	Enhancers	Adipose Nuclei	Adipose
41	chr14:97290600-97291400	Weak transcription	NHDF-Ad	bronchial
42	chr14:97290600-97291600	Enhancers	K562	blood
43	chr14:97290600-97291800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr14:97290600-97293800	Enhancers	NHEK	skin
45	chr14:97290800-97293600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr14:97291000-97291200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr14:97291000-97293200	Weak transcription	HMEC	breast
48	chr14:97291000-97297000	Weak transcription	Osteobl	bone
49	chr14:97291000-97326000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links