Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:97368790..97370505-chr14:97371182..97373886,2	K562	blood:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10132650	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10138598	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10142862	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10143496	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10146186	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10148863	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10148869	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13379109	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17094675	0.85[ASN][1000 genomes]
rs17094692	0.86[ASN][1000 genomes]
rs17094776	0.81[ASN][1000 genomes]
rs17094780	0.81[ASN][1000 genomes]
rs1884064	0.86[ASN][1000 genomes]
rs1885161	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2369902	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28463730	0.83[AMR][1000 genomes]
rs28567991	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28582851	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28587799	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28635274	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28640027	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28667199	0.83[EUR][1000 genomes]
rs28775320	0.83[AMR][1000 genomes]
rs57221296	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74076183	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs74076190	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74076844	0.81[ASN][1000 genomes]
rs74078732	0.89[ASN][1000 genomes]
rs8019781	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948620	chr14:97334444-98133191	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv832867	chr14:97365919-97541763	Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97303400-97371600	Weak transcription	Ovary	ovary
2	chr14:97331000-97378400	Weak transcription	A549	lung
3	chr14:97349200-97377400	Weak transcription	Primary T cells from cord blood	blood
4	chr14:97356000-97376600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr14:97361400-97374000	Weak transcription	Pancreas	Pancrea
6	chr14:97361600-97370400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr14:97362600-97374800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr14:97364000-97373000	Weak transcription	K562	blood
9	chr14:97366600-97370000	Weak transcription	Dnd41	blood
10	chr14:97366800-97372600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr14:97367600-97371800	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr14:97367600-97372800	Weak transcription	Primary B cells from cord blood	blood
13	chr14:97368000-97370400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr14:97368600-97391400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr14:97368800-97370000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr14:97368800-97373200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr14:97368800-97374200	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr14:97368800-97374800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr14:97369000-97373800	Weak transcription	Fetal Thymus	thymus
20	chr14:97369200-97371800	Enhancers	Monocytes-CD14+_RO01746	blood

Quick Search: