Variant report

Variant	rs13379109
Chromosome Location	chr14:97383129-97383130
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:97378925..97381574-chr14:97382835..97384827,2	K562	blood:
2	chr14:97375172..97378405-chr14:97381743..97385495,3	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10132650	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10138598	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10142862	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10143496	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10146186	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10148005	0.87[CEU][hapmap]
rs10148863	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10148869	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17094675	0.87[ASN][1000 genomes]
rs17094692	0.88[ASN][1000 genomes]
rs17094776	0.83[ASN][1000 genomes]
rs17094780	0.83[ASN][1000 genomes]
rs1884064	0.88[ASN][1000 genomes]
rs1885161	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2369902	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28463730	0.83[AMR][1000 genomes]
rs28567991	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28582851	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28587799	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28635274	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28640027	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28667199	0.85[EUR][1000 genomes]
rs28775320	0.83[AMR][1000 genomes]
rs57221296	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58143547	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74076183	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs74076190	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs74076844	0.83[ASN][1000 genomes]
rs74078732	0.91[ASN][1000 genomes]
rs8019781	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs863086	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948620	chr14:97334444-98133191	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv832867	chr14:97365919-97541763	Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97368600-97391400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:97376800-97387600	Weak transcription	Thymus	Thymus
3	chr14:97379000-97387800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:97379400-97411800	Weak transcription	Primary T cells from cord blood	blood
5	chr14:97381200-97383800	Weak transcription	Fetal Brain Male	brain
6	chr14:97381200-97386200	Weak transcription	Adipose Nuclei	Adipose
7	chr14:97381400-97383600	Weak transcription	Fetal Muscle Leg	muscle
8	chr14:97381400-97386400	Weak transcription	Fetal Brain Female	brain
9	chr14:97381400-97386600	Weak transcription	Dnd41	blood
10	chr14:97383000-97383600	Enhancers	K562	blood

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