Variant report

Variant	rs10148869
Chromosome Location	chr14:97314793-97314794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:97295429..97297910-chr14:97313409..97315091,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10131762	0.81[EUR][1000 genomes]
rs10132650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10135704	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs10138598	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10141420	0.83[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10142862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10143496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10143993	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10146186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10148005	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs10148863	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13379109	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1885161	0.81[EUR][1000 genomes]
rs2145637	0.81[EUR][1000 genomes]
rs2369902	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28441425	0.86[ASN][1000 genomes]
rs28463730	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28567991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28582851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28587799	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28635274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28640027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28667199	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28775320	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs45452297	0.86[ASN][1000 genomes]
rs55696055	0.81[EUR][1000 genomes]
rs57221296	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58143547	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59426888	0.81[EUR][1000 genomes]
rs60476292	0.81[EUR][1000 genomes]
rs73355666	0.81[EUR][1000 genomes]
rs74076130	0.81[EUR][1000 genomes]
rs74076183	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74076190	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8019781	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8022356	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv510650	chr14:97238489-97325221	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1052138	chr14:97271794-97322583	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv542180	chr14:97271794-97322583	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1043916	chr14:97275088-97320354	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1051182	chr14:97275088-97337039	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97264800-97321600	Weak transcription	Psoas Muscle	Psoas
2	chr14:97291000-97326000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr14:97291200-97326200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr14:97293400-97326400	Weak transcription	Fetal Stomach	stomach
5	chr14:97293600-97323400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr14:97294000-97323000	Weak transcription	Gastric	stomach
7	chr14:97294000-97362600	Weak transcription	Spleen	Spleen
8	chr14:97296200-97318400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr14:97297400-97323000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr14:97297400-97328000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr14:97297600-97353400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr14:97298800-97348800	Strong transcription	Dnd41	blood
13	chr14:97298800-97350600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr14:97299000-97328200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:97299200-97315800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr14:97299200-97316200	Weak transcription	Pancreas	Pancrea
17	chr14:97299200-97318400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr14:97299200-97329600	Weak transcription	Osteobl	bone
19	chr14:97299400-97329600	Weak transcription	NHEK	skin
20	chr14:97299400-97353600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr14:97300200-97319000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr14:97300200-97323200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr14:97300400-97321400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr14:97300600-97322600	Weak transcription	Fetal Kidney	kidney
25	chr14:97300600-97329800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr14:97300600-97332000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr14:97303400-97326600	Weak transcription	NHLF	lung
28	chr14:97303400-97371600	Weak transcription	Ovary	ovary
29	chr14:97303600-97315000	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr14:97303600-97315600	Weak transcription	A549	lung
31	chr14:97303600-97337400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr14:97305400-97321400	Weak transcription	HSMM	muscle
33	chr14:97305800-97321600	Weak transcription	Hela-S3	cervix
34	chr14:97306000-97330200	Weak transcription	Fetal Brain Female	brain
35	chr14:97308200-97348800	Weak transcription	Fetal Intestine Small	intestine
36	chr14:97309600-97344400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr14:97309800-97326600	Weak transcription	Placenta	Placenta
38	chr14:97310800-97325600	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr14:97311600-97325800	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr14:97311800-97316400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr14:97311800-97319000	Strong transcription	Primary B cells from cord blood	blood
42	chr14:97312200-97316200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr14:97312400-97315000	Strong transcription	HMEC	breast
44	chr14:97312400-97315600	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr14:97312400-97316200	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr14:97312400-97316400	Strong transcription	Primary B cells from peripheral blood	blood
47	chr14:97312400-97316400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr14:97312400-97316600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr14:97312600-97316200	Strong transcription	Primary hematopoietic stem cells	blood
50	chr14:97312600-97316400	Strong transcription	Primary T cells fromperipheralblood	blood

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